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Signal transduction



 
 
In biology
Biology

Biology is a branch of the natural sciences concerned with the study of living organisms and their interaction with each other and their environment ....
, signal transduction refers to any process by which a cell
Cell (biology)

The cell is the structural and functional unit of all known Life organisms. It is the smallest unit of an organism that is classified as living, and is often called the building bricks of life....
 converts one kind of signal
Signal (biology)

In biology, a signal or biopotential is an electric quantity , caused by chemical reactions of charged ions. Another use of the term lies in describing the transfer of information between and within cells, as in signal transduction....
 or stimulus into another. Most processes of signal transduction involve ordered sequences of biochemical
Biochemistry

Biochemistry is the study of the chemistry processes in living organisms. It deals with the structure and function of cellular components such as proteins, carbohydrates, lipids, nucleic acids and other biomolecules....
 reactions
Chemical reaction

A chemical reaction is a process that always results in the interconversion of chemical substances. The substance or substances initially involved in a chemical reaction are called reactants....
 inside the cell, which are carried out by enzyme
Enzyme

Enzymes are biomolecules that catalysis chemical reactions. Almost all enzymes are proteins. In enzymatic reactions, the molecules at the beginning of the process are called Substrate , and the enzyme converts them into different molecules, the products....
s, activated by second messenger
Second messenger system

In cell physiology, a secondary messenger system is a method of cellular signaling, whereby a diffusable signaling molecule is rapidly produced/secreted which can then go on to activate effector proteins within the cell to exert a cellular response....
s, resulting in a signal transduction pathway. Such processes are usually rapid, lasting on the order of milliseconds in the case of ion flux, or minutes for the activation of protein- and lipid-mediated kinase cascades, but some can take hours, and even days (as is the case with gene expression), to complete.






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In biology
Biology

Biology is a branch of the natural sciences concerned with the study of living organisms and their interaction with each other and their environment ....
, signal transduction refers to any process by which a cell
Cell (biology)

The cell is the structural and functional unit of all known Life organisms. It is the smallest unit of an organism that is classified as living, and is often called the building bricks of life....
 converts one kind of signal
Signal (biology)

In biology, a signal or biopotential is an electric quantity , caused by chemical reactions of charged ions. Another use of the term lies in describing the transfer of information between and within cells, as in signal transduction....
 or stimulus into another. Most processes of signal transduction involve ordered sequences of biochemical
Biochemistry

Biochemistry is the study of the chemistry processes in living organisms. It deals with the structure and function of cellular components such as proteins, carbohydrates, lipids, nucleic acids and other biomolecules....
 reactions
Chemical reaction

A chemical reaction is a process that always results in the interconversion of chemical substances. The substance or substances initially involved in a chemical reaction are called reactants....
 inside the cell, which are carried out by enzyme
Enzyme

Enzymes are biomolecules that catalysis chemical reactions. Almost all enzymes are proteins. In enzymatic reactions, the molecules at the beginning of the process are called Substrate , and the enzyme converts them into different molecules, the products....
s, activated by second messenger
Second messenger system

In cell physiology, a secondary messenger system is a method of cellular signaling, whereby a diffusable signaling molecule is rapidly produced/secreted which can then go on to activate effector proteins within the cell to exert a cellular response....
s, resulting in a signal transduction pathway. Such processes are usually rapid, lasting on the order of milliseconds in the case of ion flux, or minutes for the activation of protein- and lipid-mediated kinase cascades, but some can take hours, and even days (as is the case with gene expression), to complete. The number of proteins and other molecules participating in the events involving signal transduction increases as the process emanates from the initial stimulus, resulting in a "signal cascade
Biochemical cascade

A biochemical cascade is a series of chemical reactions in which the products of one reaction are consumed in the next reaction. There are several important biochemical cascade reactions in biochemistry, including the enzyme cascades, such as the coagulation#The coagulation cascade and the complement system, and the signal transduction cascad...
," beginning with a relatively small stimulus that elicits a large response. This is referred to as amplification of the signal.

History

The earliest published scientific paper
Academic publishing

Academic publishing describes the subfield of publishing which distributes academia research and scholarship. Most academic work is published in Academic journal article, book or thesis form....
 recorded in the MEDLINE
MEDLINE

MEDLINE is a literature Bibliographic database of life sciences and biomedical information. It includes medicine, nursing, pharmacy, dentistry, veterinary medicine, and health care....
 database as containing the specific term "signal transduction" within its text was published in 1972. Prior to 1977 articles can be found that use the term "signal transmission" or "sensory transduction" within their title or abstract. However, it was not until 1977 that papers began to be published with the specific term "signal transduction" within their abstract
Abstract (summary)

An abstract is a brief summary of a research article, thesis, review, academic conference proceedings or any in-depth analysis of a particular subject or discipline, and is often used to help the reader quickly ascertain the paper's purpose....
; it was not until 1979 that this term appeared within a paper title. One source attributes the widespread use of the term signal transduction to a 1980 review article by Rodbell.

As can be seen from the graph to the right, it is not until the late 1980s/early 1990s that research papers directly addressing signal transduction processes began to appear in large numbers in the scientific literature
Scientific literature

Scientific literature comprises scientific publications that report original empirical and theoretical work in the natural science and social sciences, and within a scientific field is often abbreviated as the literature....
. The occurrence of a specific term within the title or abstract of a scientific paper is usually a good indicator that the paper addresses a specifically related area of research
Scientific method

Scientific method refers to techniques for investigating phenomenon, acquiring new knowledge, or correcting and integrating previous knowledge. To be termed scientific, a method of inquiry must be based on gathering observable, empirical and Measure evidence subject to specific principles of reasoning....
.

While there may be considered to be a number of landmark or important discoveries in the field of signal transduction, such as the link made by Rodbell between metabolic regulation and the activity of GTP
Guanosine triphosphate

Guanosine-5'-triphosphate is a purine nucleotide. One role is as substrate for the synthesis of RNA during transcription . Its structure is similar to that of the guanine nucleoside, the only difference being that there are three phosphate groups attached to the 5' carbon....
 and GTP-binding proteins
Guanosine triphosphate

Guanosine-5'-triphosphate is a purine nucleotide. One role is as substrate for the synthesis of RNA during transcription . Its structure is similar to that of the guanine nucleoside, the only difference being that there are three phosphate groups attached to the 5' carbon....
, much of our current understanding of signal transduction processes is as a result of numerous contributions made to the field over many years by different research groups all over the world.

The total number of scientific papers related to signal transduction published since 1st Jan 1977 up to the 31st December 2007 was 48,377 of which only 11,211 were reviews of other papers
Review journal

A review journal in academic publishing is a periodical or series that is devoted to the publication of review articles that summarize the progress in some particular area or topic during a preceding period....


Signaling molecules


Most signal transduction involves the binding of extracellular
Extracellular matrix

In biology, the extracellular matrix is the extracellular part of animal tissue that usually provides structural support to the animal Cell in addition to performing various other important functions....
 signaling molecules (or ligand
Ligand

In chemistry, a ligand is either an atom, ion, or molecule that bonds to a central metal, generally involving formal donation of one or more of its electrons....
s) to cell-surface receptors that face outward from the plasma membrane
Cell membrane

The cell membrane is the interface between the cellular machinery inside the cell and the fluid outside.It is a semipermeable lipid bilayer found in all cell ....
 and trigger events inside the cell. Also, intracellular signaling cascades can be triggered through cell-substratum interactions, as in the case of integrin
Integrin

Integrins are cell surface receptors that interact with the extracellular matrix and mediate various cell signaling. They define cellular shape, mobility, and regulate the cell cycle....
s, which bind ligands found within the extracellular matrix
Extracellular matrix

In biology, the extracellular matrix is the extracellular part of animal tissue that usually provides structural support to the animal Cell in addition to performing various other important functions....
. Steroid
Steroid

A steroid is a terpenoid lipid characterized by a carbon skeleton with four fused rings, generally arranged in a 6-6-6-5 fashion.Steroids vary by the functional groups attached to these rings and the oxidation state of the rings....
s represent another example of extracellular signaling molecules that may cross the plasma membrane due to their lipophilic or hydrophobic
Hydrophobe

In chemistry, hydrophobicity refers to the physical property of a molecule that is repelled from a mass of water.Hydrophobic molecules tend to be non-polar and thus prefer other neutral molecules and nonpolar solvents....
 nature. Many, but not all, steroids have receptors within the cytoplasm
Cytoplasm

The cytoplasm is the part of a Cell that is enclosed within the plasma membrane. In eukaryote cells the cytoplasm contains organelles, such as mitochondrion, that are filled with liquid kept separate from the rest of the cytoplasm by biological membranes....
, and usually act by stimulating the binding of their receptors to the promoter region
Promoter

In biology, a promoter is a region of DNA that facilitates the Transcription of a particular gene. Promoters are typically located near the genes they regulate, on the same strand and Upstream and downstream ....
 of steroid-responsive genes
Gênes

G?nes is the name of a d?partement in France of the First French Empire in present Italy. It was named after the city Genoa. It was formed in 1805, when Napoleon Bonaparte occupied the Republic of Genoa....
. Within multicellular organisms, there is a diverse number of small molecules and polypeptides that serve to coordinate a cell's individual biological activity within the context of the organism as a whole. These molecules have been functionally classified as:

  • hormones (e.g., melatonin
    Melatonin

    Melatonin , also known chemically as N-acetyl-5-methoxytryptamine, is a naturally occurring hormone found in most animals, including humans, and some other living organisms, including algae....
    ),
  • growth factors (e.g. epidermal growth factor
    Epidermal growth factor

    Epidermal growth factor or EGF is a growth factor that plays an important role in the regulation of cell growth, proliferation, and Cellular differentiation by binding to its receptor Epidermal growth factor receptor....
    ),
  • extra-cellular matrix components
    Extracellular matrix

    In biology, the extracellular matrix is the extracellular part of animal tissue that usually provides structural support to the animal Cell in addition to performing various other important functions....
     (e.g., fibronectin
    Fibronectin

    Fibronectin is a high-molecular weight extracellular matrix glycoprotein that binds to cell membrane-spanning receptor proteins called integrins....
    ),
  • cytokines (e.g., interferon-gamma
    Interferon-gamma

    Interferon-gamma is a dimerized soluble cytokine that is the only member of the type II class of interferons. This interferon was originally called macrophage-activating factor, a term now used to describe a larger family of proteins to which IFN-? belongs....
    ),
  • chemokines (e.g., RANTES
    RANTES

    Chemokine ligand 5 also known as CCL5 or RANTES is a protein which in humans is encoded by the CCL5 gene....
    ),
  • neurotransmitters (e.g., acetylcholine
    Acetylcholine

    The chemical compound acetylcholine is a neurotransmitter in both the peripheral nervous system and central nervous system in many organisms including homo sapiens....
    ), and
  • neurotrophins (e.g., nerve growth factor
    Nerve growth factor

    Nerve growth factor , is a small secreted protein which induces the Cellular differentiation and survival of particular target neurons . It is perhaps the prototypical growth factor, in that it is one of the first to be described ? that work by Rita Levi-Montalcini and Stanley Cohen was rewarded with a Nobel Prize....
    ).


It is important to note that most of these classifications do not take into account the molecular nature of each class member. For example, as a class, neurotransmitters consist of neuropeptides such as endorphins and small molecules such as serotonin
Serotonin

Serotonin is a monoamine neurotransmitter synthesized in serotonergic neurons in the central nervous system and enterochromaffin cells in the gastrointestinal tract of animals including humans....
and dopamine
Dopamine

Dopamine is a neurotransmitter occurring in a wide variety of animals, including both vertebrates and invertebrates. In the human brain, this phenethylamine functions as a neurotransmitter, activating the five types of dopamine receptors ? D1, D2, D3, D4 and D5, and their variants....
. Hormones are also a generic class of molecule able to initiate signal transduction, these include insulin
Insulin

Insulin is a hormone with extensive effects on both metabolism and several other body systems . Insulin causes most of the body's cells to take up glucose from the blood , storing it as glycogen in the liver and muscle, and stops use of fat as an energy source....
 (a polypeptide), testosterone
Testosterone

Testosterone is a steroid hormone from the androgen group. In mammals, testosterone is primarily secreted in the testis of males and the ovaries of females, although small amounts are also secreted by the adrenal glands....
 (a steroid
Steroid

A steroid is a terpenoid lipid characterized by a carbon skeleton with four fused rings, generally arranged in a 6-6-6-5 fashion.Steroids vary by the functional groups attached to these rings and the oxidation state of the rings....
), and epinephrine
Epinephrine

Epinephrine is a hormone and neurotransmitter.Epinephrine increases the "fight or flight" response of the Sympathetic nervous system of the autonomic nervous system....
 (an amino acid
Amino acid

In chemistry, an amino acid is a molecule containing both amine and carboxyl functional groups. These molecules are particularly important in biochemistry, where this term refers to alpha-amino acids with the general formula H2NCHRCOOH, where R is an organic substituent....
 derivative, in essence a small organic
Organic chemistry

Organic chemistry is a discipline within chemistry which involves the science study of the structure, properties, composition, chemical reaction, and preparation of chemical compounds that contain carbon....
 molecule).

The classification of one molecule into one class of another is not exact. For example, epinephrine
Epinephrine

Epinephrine is a hormone and neurotransmitter.Epinephrine increases the "fight or flight" response of the Sympathetic nervous system of the autonomic nervous system....
 and norepinephrine
Norepinephrine

Norepinephrine or noradrenaline is a catecholamine with dual roles as a hormone and a neurotransmitter.As a stress hormone, norepinephrine affects parts of the brain where attention and responding actions are controlled....
 secreted by the central nervous system
Central nervous system

The central nervous system is the part of the nervous system that functions to coordinate the activity of all parts of the bodies of multicellular organisms....
 act as neurotransmitters. However, epinephrine
Epinephrine

Epinephrine is a hormone and neurotransmitter.Epinephrine increases the "fight or flight" response of the Sympathetic nervous system of the autonomic nervous system....
 when secreted by the adrenal medulla
Adrenal medulla

The adrenal medulla is part of the adrenal gland. It is located at the center of the gland, being surrounded by the adrenal cortex.Basic...
 acts as a hormone
Hormone

Hormones are chemicals released by cells that affect cells in other parts of the body. Only a small amount of hormone is required to alter cell metabolism....
.

Environmental stimuli


In bacteria and other single-cell organism
Organism

In biology, an organism is any life thing . In at least some form, all organisms are capable of response to stimulus , reproduction, growth and developmental biology, and maintenance of homeostasis as a stable whole....
s, the variety of a signal transduction processes of which the cell is capable influences how many ways it can react and respond to its environment. In multicellular organisms, a multitude of different signal transduction processes are required for coordinating the behavior of individual cells to support the function of the organism as a whole. As may be expected, the more complex the organism, the more complex the repertoire of signal transduction processes the organism must possess. Thus, sensing
Sense

Senses are the physiological methods of perception. The senses and their operation, classification, and theory are overlapping topics studied by a variety of fields, most notably neuroscience, cognitive psychology , and philosophy of perception....
 of both the external and internal environments at the cellular level relies on signal transduction. Many disease processes such as diabetes, heart disease
Atherosclerosis

Atherosclerosis is a syndrome affecting artery blood vessels. It is a chronic inflammatory response in the walls of arteries, in large part due to the accumulation of macrophage white blood cells and promoted by low density lipoproteins without adequate removal of fats and cholesterol from the macrophages by functional high density lipoprot...
, autoimmunity
Autoimmunity

Autoimmunity is the failure of an organism to recognize its own constituent parts as self, which results in an immune response against its own cells and tissues....
, and cancer
Cancer

Cancer is a class of diseases in which a group of cell display uncontrolled growth , invasion , and sometimes metastasis . These three malignant properties of cancers differentiate them from benign tumors, which are self-limited, do not invade or metastasize....
 arise from defects in signal transduction pathways, further highlighting the critical importance of signal transduction to biology, as well as medicine.

In addition to many of the regular signal transduction stimuli listed above, in complex organisms, there are also examples of additional environmental stimuli that initiate signal transduction processes. Environmental stimuli may also be molecular in nature (as above) or more physical, such as light striking cells in the retina
Retina

The vertebrate retina is a light sensitive tissue lining the inner surface of the eye. The optics of the eye create an image of the visual world on the retina, which serves much the same function as the film in a camera....
 of the eye, odorants binding to odorant receptors
Olfactory receptor neuron

An olfactory receptor neuron, also called an olfactory sensory neuron, is the primary transduction cell in the olfactory system....
 in the nasal epithelium
Olfactory epithelium

The olfactory epithelium is a specialized epithelium tissue inside the nasal cavity that is involved in olfaction. In humans, it measures about 2 cm by 5 cm long and lies on the roof of the nasal cavity about 3 inches above and behind the nostrils....
, and bitter and sweet tastes stimulating taste receptors
G protein-coupled receptor

G protein-coupled receptors , also known as seven transmembrane domain receptors, 7TM receptors, heptahelical receptors, serpentine receptor, and G protein-linked receptors , comprise a large protein family of transmembrane receptors that sense molecules outside the Cell and activate inside signal transductio...
 in the taste buds. Certain microbial molecules, e.g., viral nucleotide
Nucleotide

Nucleotides are molecules that comprise the structural units of RNA and DNA. Additionally, nucleotides play central roles in metabolism. In that capacity, they serve as sources of chemical energy , participate in cell signaling , and are incorporated into important cofactors of enzymatic reactions ....
s, bacterial lipopolysaccharide
Lipopolysaccharide

Lipopolysaccharides , also known as lipoglycans, are large molecules consisting of a lipid and a polysaccharide joined by a covalent bond; they are found in the outer membrane of Gram-negative bacteria, act as endotoxins and elicit strong immune responses in animals....
s, and protein antigen
Antigen

An antigen is a substance that prompts the generation of antibodies and can cause an immune response. The word originated from the notion that they can stimulate antibody generation....
s, are able to elicit an immune system
Immune system

An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
 response against invading pathogen
Pathogen

A pathogen , infectious agent, or germ, is a biological agent that causes disease or illness to its Host .There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination has the longest or most persistent potential for harboring...
s, mediated via signal transduction processes. An immune response may occur independent of signal transduction stimulation by other molecules, as is the case for signal transduction via the Toll-like receptor
Toll-like receptor

Toll-like receptors are a class of proteins that play a key role in the innate immune system. They are single membrane-spanning non-catalytic Receptor that recognize structurally conserved molecules derived from microbes....
 or with help from stimulatory molecules located at the cell surface of other cells, as is the case for T-cell receptor signaling.

Unicellular organisms may also respond to environmental stimuli via the activation of signal transduction pathways. For example, slime molds
Dictyostelid

The dictyostelids are a group of cellular slime molds, or social amoebae. When food, normally bacteria, is readily available they are individual amoebae, which feed and divide normally....
 secrete cyclic-AMP
Cyclic adenosine monophosphate

Cyclic adenosine monophosphate is a second messenger that is important in many biological processes. cAMP is derived from adenosine triphosphate and used for intracellular signal transduction in many different organisms....
 upon starvation, which stimulates individual cells in the immediate environment to aggregate. Yeast
Yeast

Yeasts are eukaryote microorganisms classified in the Kingdom fungus, with about 1,500 species currently described; they dominate fungal diversity in the oceans....
 also use mating factor
Mating of yeast

The yeast Saccharomyces cerevisiae is a simple Microorganism eukaryote with both a diploid and haploid mode of existence. The mating of yeast only occurs between haploids, which can be either the a or a mating type and thus display simple sexual differentiation....
s to determine the mating types of other yeast and participate in sexual reproduction.

Cellular responses


Activation
Transcription (genetics)

Transcription is the synthesis of RNA under the direction of DNA. RNA synthesis, or transcription, is the process of transcribing DNA nucleotide sequence information into RNA sequence information....
 of gene
Gene

A gene is the basic unit of heredity in a living organism. All living things depend on genes. Genes hold the information to build and maintain their cell and pass genetic trait to offspring....
s, alterations in metabolism
Metabolism

Metabolism is the set of chemical reactions that occur in living organisms in order to maintain life. These processes allow organisms to grow and reproduce, maintain their structures, and respond to their environments....
, the continued proliferation
Cell division

Cell division is a process by which a cell , called the parent cell, divides into two or more cells, called daughter cells. Cell division is usually a small segment of a larger cell cycle....
 and death
Apoptosis

Apoptosis is the process of programmed cell death that may occur in multicellular organisms. Programmed Cell death involves a series of biochemical events leading to a characteristic cell Morphology and death, in more specific terms, a series of biochemical events that lead to a variety of morphological changes, including Bleb , changes...
 of the cell, and the stimulation or suppression of locomotion
Chemotaxis

Chemotaxis, a kind of taxis, is the phenomenon in which bodily cells, bacterium, and other single-cell or multicellular organisms direct their movements according to certain chemicals in their environment....
, are some of the cellular responses to extracellular stimulation that require signal transduction. Gene activation leads to further cellular effects, since the protein
Protein

Proteins are organic compounds made of amino acids arranged in a linear chain and joined together by peptide bonds between the carboxyl and amino groups of adjacent amino acid Residue ....
 products of many of the responding genes include enzymes and transcription factor
Transcription factor

In the field of molecular biology, a transcription factor is a protein that binds to specific DNA sequence and thereby controls the transfer of genetic information from DNA to RNA....
s themselves. Transcription factors produced as a result of a signal transduction cascade can, in turn, activate yet more genes. Therefore an initial stimulus can trigger the expression of an entire cohort of genes, and this, in turn, can lead to the activation of any number of complex physiological events. These events include the increased uptake of glucose
Glucose

Glucose , a monosaccharide also known as grape sugar, blood sugar, or corn sugar, is a very important carbohydrate in biology....
 from the blood stream stimulated by insulin
Insulin

Insulin is a hormone with extensive effects on both metabolism and several other body systems . Insulin causes most of the body's cells to take up glucose from the blood , storing it as glycogen in the liver and muscle, and stops use of fat as an energy source....
 and the migration of neutrophils to sites of infection stimulated by bacterial products. The set of genes and the order in which they are activated in response to stimuli are often referred to as a genetic program
Genetic program

In biology, a genetic program of a cell is a physiology change brought about by a temporal pattern of Transcription of a particular subset of genes....
.

Neurotransmitters are ligands that are capable of binding to ion channel
Ion channel

Ion channels are pore-forming proteins that help establish and control the small voltage gradient across the plasma membrane of all living cell s by allowing the flow of ions down their electrochemical gradient....
 proteins, resulting in their opening to allow the rapid flow of a particular ion across the plasma membrane. This results in an altering of the cell's membrane potential
Membrane potential

Membrane potential , is the voltage difference between the interior and exterior of a cell. Because the fluid inside and outside a cell is highly conductive, whereas a cell's plasma membrane is highly resistive, the voltage change in moving from a point outside to a point inside occurs largely within the narrow width of the membrane itself...
 and is important for processes such as the neural conduction of electrochemical impulses
Neuron

Neurons are responsive cell in the nervous system that process and transmit information by electrochemical Signal . They are the core components of the brain, the vertebrate spinal cord, the invertebrate ventral nerve cord, and the peripheral nerves....
. Ligands can be freely soluble
Epidermal growth factor

Epidermal growth factor or EGF is a growth factor that plays an important role in the regulation of cell growth, proliferation, and Cellular differentiation by binding to its receptor Epidermal growth factor receptor....
, or can be found on the surface of other cells or within the extracellular matrix
Extracellular matrix

In biology, the extracellular matrix is the extracellular part of animal tissue that usually provides structural support to the animal Cell in addition to performing various other important functions....
. Such cell surface or extracellular matrix ligands signal between cells when they come in contact with each other, such as when a phagocytic cell
Dendritic cell

Dendritic cells are immune cells and form part of the mammalian immune system. Their main function is to process antigen material and present it on the surface to other cells of the immune system, thus functioning as antigen-presenting cells....
 presents antigen
Antigen

An antigen is a substance that prompts the generation of antibodies and can cause an immune response. The word originated from the notion that they can stimulate antibody generation....
s to lymphocytes
T cell receptor

The T cell receptor or TCR is a molecule found on the surface of T lymphocytes that is, in general, responsible for recognizing antigens bound to major histocompatibility complex molecules....
, or upon adhesion to the extracellular matrix, as when integrins at the cell surface of fibroblasts engage fibronectin
Fibronectin

Fibronectin is a high-molecular weight extracellular matrix glycoprotein that binds to cell membrane-spanning receptor proteins called integrins....
.

Most mammalian cells require stimulation to control not only cell division but also survival. In the absence of growth factor
Growth factor

The term growth factor refers to a naturally occurring protein capable of stimulating cellular growth, proliferation and cellular differentiation....
 stimulation, programmed cell death
Apoptosis

Apoptosis is the process of programmed cell death that may occur in multicellular organisms. Programmed Cell death involves a series of biochemical events leading to a characteristic cell Morphology and death, in more specific terms, a series of biochemical events that lead to a variety of morphological changes, including Bleb , changes...
 ensues in most cells. Such requirements for extra-cellular stimulation are necessary for controlling cell behavior in the context of both unicellular and multi-cellular organisms. Signal transduction pathways are perceived to be so central to biological processes that it is not surprising that a large number of diseases have been attributed to their disregulation.

Discussed below are how signal transduction via various classes of receptor may lead to the above cellular responses.

Types of receptor

Receptors can be roughly divided into two major classes:

  1. Intracellular
    Intracellular

    Not to be confused with intercellular, meaning "between cells".In cell biology, molecular biology and related fields, the word intracellular means "inside the cell "....
     receptors and
  2. Cell-surface receptors.


Ligand-gated ion channel receptors
Ligand-gated ion channel

Ligand-gated ion channels , also referred to as ionotropic receptors or channel-linked receptors, are a group of transmembrane ion channels that are opened or closed in response to the binding of a chemical messenger , such as a neurotransmitter....
 are a class of receptor that may occur both at the cell-surface or intracellular
Intracellular

Not to be confused with intercellular, meaning "between cells".In cell biology, molecular biology and related fields, the word intracellular means "inside the cell "....
ly.

Receptors that are solely intracellular
Intracellular

Not to be confused with intercellular, meaning "between cells".In cell biology, molecular biology and related fields, the word intracellular means "inside the cell "....
 include those for steroid hormone
Steroid hormone

Steroid hormones are steroids that act as hormones. Steroid hormones can be grouped into five groups by the receptor s to which they bind: glucocorticoids, mineralocorticoids, androgens, estrogens, and progestagens....
s, thyroid hormone
Thyroid hormone

The thyroid hormones, thyroxine and triiodothyronine , are tyrosine-based hormones produced by the thyroid gland. An important component in the synthesis of thyroid hormones is iodine....
, retinoic acid
Retinoic acid

Retinoic acid is the oxidized form of Vitamin A. It functions in determining position along embryonic anterior/posterior axis in chordates. It acts through Hox genes, which ultimately controls anterior/posterior patterning in early developmental stages....
, and derivatives of vitamin D3
Vitamin D

Vitamin D is a group of fat-soluble prohormones, the two major forms of which are vitamin D2 and vitamin D3 . The term vitamin D also refers to metabolites and other analogues of these substances....
. In contrast to ligands that bind to cell surface receptors, in order to initiate signal transduction these ligands must cross the cell membrane
Cell membrane

The cell membrane is the interface between the cellular machinery inside the cell and the fluid outside.It is a semipermeable lipid bilayer found in all cell ....
. See the intracellular receptors
Signal transduction

In biology, 'signal transduction' refers to any process by which a cell converts one kind of signal or stimulus into another. Most processes of signal transduction involve ordered sequences of biochemistry chemical reaction inside the cell, which are carried out by enzymes, activated by Second messenger systems, resulting in a signal tran...
 section below for more details.

Cell-surface receptors


Cell-surface receptors are integral transmembrane protein
Transmembrane protein

A transmembrane protein is a protein that spans the entire biological membrane. Transmembrane proteins aggregate and precipitate in water. They require detergents or nonpolar solvents for extraction, although some of them can be also extracted using denaturing agents....
s and recognize the vast majority of extracellular signaling molecules. Transmembrane receptor
Transmembrane receptor

Transmembrane receptors are integral membrane proteins, which reside and operate typically within a cell's plasma membrane, but also in the biological membrane of some subcellular compartments and organelles....
s span the plasma membrane of the cell, with one part of the receptor on the outside of the cell (the extracellular domain), and the other on the inside of the cell (the intracellular domain). Signal transduction occurs as a result of stimulatory molecule or the binding of a ligand
Ligand (biochemistry)

In biochemistry, a ligand is a Chemical substance that is able to bind to and form a Complex with a biomolecule to serve a biological purpose....
 to its extracellular domain; the ligand itself does not pass through the plasma membrane prior to receptor-binding.

Binding of a ligand to a cell-surface receptor stimulates a series of events inside the cell, with different types of receptor stimulation of different intracellular responses. Receptors typically respond to only the binding of a specific ligand
Ligand (biochemistry)

In biochemistry, a ligand is a Chemical substance that is able to bind to and form a Complex with a biomolecule to serve a biological purpose....
. Upon binding, the ligand initiates the transmission of a signal across the plasma membrane by inducing a change in the shape or conformation of the intracellular part of the receptor (see this link for a molecular model for receptor activation). Often, such changes in conformation either result in the activation of an enzymatic activity contained within the receptor or expose a binding site for other signaling proteins within the cell. Once these proteins bind to the receptor, they themselves may become active and propagate the signal into the cytoplasm.

In eukaryotic
Eukaryote

Animals, plants, fungus, and protists are eukaryotes , organisms whose Cell are organized into complex structures enclosed within Cell membrane....
 cells, most intracellular proteins activated by a ligand/receptor interaction possess an enzymatic activity. These enzymes include tyrosine kinase
Tyrosine kinase

A tyrosine kinase is an enzyme that can transfer a phosphate group from Adenosine triphosphate to a tyrosine residue in a protein. Tyrosine kinases are a subgroup of the larger class of protein kinases....
, heterotrimeric G protein
G protein

G proteins, short for guanine nucleotide-binding proteins, are a family of proteins involved in second messenger cascades.G proteins are so called because they function as "molecular switches," alternating between an inactive guanosine diphosphate and active guanosine triphosphate bound state, ultimately going on to regulate down...
s, small GTPase
Small GTPase

In biology, small GTPases are small proteins that bind to guanosine triphosphate . This family of proteins is Homology_ to Ras_ and also called the Ras superfamily GTPases....
s, various serine/threoine protein kinase
Protein kinase

A protein kinase is a kinase enzyme that modifies other proteins by chemically adding phosphate groups to them . Phosphorylation usually results in a functional change of the target protein by changing enzyme catalysis, cellular location, or association with other proteins....
s, phosphatases, lipid kinases
Phosphoinositide 3-kinase

Phosphoinositide 3-kinases are a family of related enzymes that are capable of phosphorylating the 3 position hydroxyl group of the inositol ring of phosphatidylinositol ....
, and hydrolases
Phospholipase C

Phosphoinositide phospholipase C is a family of eukaryotic intracellular enzymes that play an important role in signal transduction processes....
. Some receptor-stimulated enzymes create specific second messengers including cyclic nucleotide
Cyclic nucleotide

A cyclic nucleotide is any nucleotide in which the phosphate group is bonded to two of the sugar's hydroxyl groups, forming a cyclical or ring structure....
s, such as cyclic AMP (cAMP) and cyclic GMP (cGMP), Phosphatidylinositol
Phosphatidylinositol

Phosphatidylinositol is a minor phospholipid component in the cytosolic side of eukaryotic cell membranes. Being an amphiphile, this molecule possesses lipid polymorphism behaviour, that is currently a topic of research in academic study....
 derivatives, such as Phosphatidylinositol-triphosphate (PIP3), Diacylglycerol
Diglyceride

A diglyceride, or a diacylglycerol , is a glyceride consisting of two fatty acid chains covalent bond to a glycerol molecule through ester linkages....
 (DAG) and Inositol-triphosphate
IP3

IP3 or IP-3 may be:* Inositol triphosphate , used for signal transduction in biological cells* Third-order intercept point, in radio telecommunication...
 (IP3), IP3
IP3

IP3 or IP-3 may be:* Inositol triphosphate , used for signal transduction in biological cells* Third-order intercept point, in radio telecommunication...
, controlling the release of intracellular calcium stores into the cytoplasm (see second messengers
Signal transduction

In biology, 'signal transduction' refers to any process by which a cell converts one kind of signal or stimulus into another. Most processes of signal transduction involve ordered sequences of biochemistry chemical reaction inside the cell, which are carried out by enzymes, activated by Second messenger systems, resulting in a signal tran...
 section later in this article). Other activated proteins interact with adapter proteins. Adapter proteins facilitate interactions between other signaling proteins, and coordinate the formation of signaling complexes necessary to produce an appropriate cellular response to a particular stimulus. Enzymes and adapter proteins are both responsive to various second messenger molecules.

Many of the enzymes activated as part of the signal transduction mechanism and also many adapter proteins have been found to possess specialized protein domains that bind to specific secondary messenger molecules. For example, calcium ions bind specifically to the EF hand
EF hand

The EF hand is a helix-loop-helix structural domain found in a large protein family of calcium-binding proteins. It consists of two alpha helix positioned roughly perpendicular to one another and linked by a short loop region that usually binds calcium ions....
 domains of calmodulin
Calmodulin

Calmodulin is a calcium-binding protein expressed in all eukaryotic cells. It can bind to and regulate a number of different protein targets, thereby affecting many different cellular functions....
, allowing this molecule to bind and activate Calmodulin-dependent kinase. PIP3, PIP2 and other phosphoinositides may bind to the Pleckstrin homology domain
Pleckstrin homology domain

Pleckstrin homology domain is a protein domain of approximately 120 amino acids that occurs in a wide range of proteins involved in intracellular signaling or as constituents of the cytoskeleton....
s of proteins such as the kinase protein AKT
AKT

AKT protein family, which members are also called protein kinases B plays an important role in Mammal cellular signaling....
 again with activation activity.

There are many different classes of transmembrane receptor that recognize different extracellular signaling molecules. Specific example receptors discussed in this article are:

  1. G-protein coupled receptors, e.g., Chemokine
    Chemokine

    Chemokines are a family of small cytokines, or proteins secreted by Cell s. Proteins are classified as chemokines according to shared structural characteristics such as small size , and the presence of four cysteine residues in conserved locations that are key to forming their 3-dimensional shape....
     receptors
  2. Receptor tyrosine kinase
    Receptor tyrosine kinase

    Receptor tyrosine kinases s are the high dissociation constant#Protein-Ligand binding cell surface receptors for many polypeptide growth factors, cytokines and hormones....
    s, e.g., Growth factor
    Growth factor

    The term growth factor refers to a naturally occurring protein capable of stimulating cellular growth, proliferation and cellular differentiation....
     receptors,
  3. Integrins
  4. Toll-like receptor
    Toll-like receptor

    Toll-like receptors are a class of proteins that play a key role in the innate immune system. They are single membrane-spanning non-catalytic Receptor that recognize structurally conserved molecules derived from microbes....
    s


Further examples are given in the transmembrane receptor
Transmembrane receptor

Transmembrane receptors are integral membrane proteins, which reside and operate typically within a cell's plasma membrane, but also in the biological membrane of some subcellular compartments and organelles....
 article.

G-protein-coupled receptors

G Protein Signal Transduction (epinephrin Pathway)
G-protein-coupled receptors (GPCRs) are a family of integral membrane protein
Integral membrane protein

An Integral Membrane Protein is a protein molecule that is permanently attached to the biological membrane. Such proteins can be separated from the biological membranes only using detergents, nonpolar solvents, or sometimes Denaturation agents....
s that possess seven membrane-spanning domains, and are linked to a guanine nucleotide-binding protein (or heterotrimeric G protein
G protein

G proteins, short for guanine nucleotide-binding proteins, are a family of proteins involved in second messenger cascades.G proteins are so called because they function as "molecular switches," alternating between an inactive guanosine diphosphate and active guanosine triphosphate bound state, ultimately going on to regulate down...
). Many receptors make up this family, including adrenergic receptor
Adrenergic receptor

The adrenergic receptors are a class of G protein-coupled receptors that are targets of the catecholamines. Adrenergic Receptor s specifically bind and are activated by their endogenous ligands, the catecholamines adrenaline and noradrenaline ....
s, neurotransmitter receptors, olfactory receptor
Olfactory receptor

Olfactory receptors expressed in the cell membranes of olfactory receptor neurons are responsible for the detection of odor molecules. Activated olfactory receptors are the initial player in a signal transduction cascade which ultimately produces a nerve impulse which is transmitted to the brain....
s, opioid receptor
Opioid receptor

Opioid receptors are a group of G-protein coupled receptors with opioids as ligands. The endogenous opioids are dynorphins, enkephalins, endorphins, endomorphins and nociceptin....
s, chemokine receptor
Chemokine receptor

Chemokine receptors are cytokine receptors found on the surface of certain cells, which interact with a type of cytokine called a chemokine. There have been 19 distinct chemokine receptors described in mammals....
s, and rhodopsin
Rhodopsin

Rhodopsin, also known as visual purple, is a pigment of the retina that is responsible for both the formation of the photoreceptor cells and the first events in the perception of light....
.

Signal transduction by a GPCR begins with an inactive G protein coupled to the receptor. An inactive G protein exists as a heterotrimer, a molecule composed of three different protein subunits: Ga, Gß, and G?. Once the GPCR recognizes a ligand, the shape (conformation) of the receptor changes to mechanically activate the G protein, and causes one subunit (Ga) to bind a molecule of GTP (causing activation) and dissociate from the other two G-protein subunits (Gß and G?); the dissociation exposes sites on the G-protein subunits that interact with other molecules. The activated G protein subunits detach from the receptor and initiate signaling from many downstream effector proteins, including phosphodiesterase
Phosphodiesterase

A phosphodiesterase is any enzyme that breaks a phosphodiester bond. Usually, people speaking of phosphodiesterase are referring to cyclic nucleotide phosphodiesterases, which have great clinical significance and are described below....
s and adenylyl cyclases, phospholipase
Phospholipase

A phospholipase is an enzyme that hydrolyzes phospholipids into fatty acids and other lipophilic substances. There are four major classes, termed A, B, C and D distinguished by what type of reaction they catalyze:...
s, and ion channels that permit the release of second messenger molecules such as cyclic-AMP
Cyclic adenosine monophosphate

Cyclic adenosine monophosphate is a second messenger that is important in many biological processes. cAMP is derived from adenosine triphosphate and used for intracellular signal transduction in many different organisms....
 (cAMP), cyclic-GMP
Cyclic guanosine monophosphate

Cyclic guanosine monophosphate is a cyclic nucleotide derived from guanosine triphosphate . cGMP acts as a second messenger much like cyclic AMP, most notably by activating intracellular protein kinases in response to the binding of cell membrane-impermeable peptide hormones to the external cell surface....
 (cGMP), inositol triphosphate
Inositol triphosphate

Inositol trisphosphate or inositol 1,4,5-trisphosphate , together with diglyceride, is a secondary messenger molecule used in signal transduction in cell s....
 (IP3), diacylglycerol (DAG), and calcium (Ca2+) ions. For example, a rhodopsin
Rhodopsin

Rhodopsin, also known as visual purple, is a pigment of the retina that is responsible for both the formation of the photoreceptor cells and the first events in the perception of light....
 molecule in the plasma membrane of a retina
Retina

The vertebrate retina is a light sensitive tissue lining the inner surface of the eye. The optics of the eye create an image of the visual world on the retina, which serves much the same function as the film in a camera....
 cell in the eye
Eye

Eyes are Organ that detect light, and send signals along the optic nerve to the visual system and other areas of the brain. Complex optical systems with resolving power have come in ten fundamentally different forms, and 96% of animal species possess a complex optical system....
 that was activated by a photon
Photon

In physics, the photon is an elementary particle, the quantum of the electromagnetic field and the basic unit of light and all other forms of electromagnetic radiation....
 can activate up to 2000 effector molecules (in this case, transducin
Transducin

Transducin is a heterotrimeric G protein that is naturally gene expression in vertebrate retina rods and cones . Heterotrimeric Transducin is activated by a conformational change in rhodopsin due to the absorption of a photon by rhodopsin's active group retinal; Activation causes the GDP bound to the alpha subunit to be exchanged with GTP...
) per second.

The total strength of signal amplification by a GPCR is determined by:

  • The lifetime of the ligand-receptor-complex. If the ligand-receptor-complex is stable, it takes longer for the ligand to dissociate from its receptor, thus the receptor will remain active for longer and will activate more effector proteins.
  • The amount and lifetime of the receptor-effector protein-complex. The more effector protein is available to be activated by the receptor, and the faster the activated effector protein can dissociate from the receptor, the more effector protein will be activated in the same amount of time.
  • Deactivation of the activated receptor. A receptor that is engaged in a hormone-receptor-complex can be deactivated, either by covalent modification (for example, phosphorylation) or by internalization (see ubiquitin
    Ubiquitin

    Ubiquitin is a highly-conserved regulatory protein that is :wiktionary:ubiquitous expressed in eukaryotes. Ubiquitination refers to the post-translational modification of a protein by the covalent attachment of one or more ubiquitin monomers....
    ).
  • Deactivation of effectors through intrinsic enzymatic activity. Either small or large G-proteins possess intrinsic GTPase activity, which controls the duration of the triggered signal. This activity may be increased through the action of other proteins such as GTPase-activating proteins (GAPS).


The idea that G-protein-coupled receptors, to be specific, chemokine receptors, participate in cancer development is suggested by a study wherein a point mutation
Point mutation

A point mutation, or single base substitution, is a type of mutation that causes the replacement of a single base nucleotide with another nucleotide of the genetic material, DNA or RNA....
 was inserted into the gene
Gene

A gene is the basic unit of heredity in a living organism. All living things depend on genes. Genes hold the information to build and maintain their cell and pass genetic trait to offspring....
 encoding the chemokine
Chemokine

Chemokines are a family of small cytokines, or proteins secreted by Cell s. Proteins are classified as chemokines according to shared structural characteristics such as small size , and the presence of four cysteine residues in conserved locations that are key to forming their 3-dimensional shape....
 receptor CXCR2. Cells transfected
Transfection

Transfection is the process of introducing nucleic acids into cells by non-viral methods . The term transformation is preferred to describe non-viral DNA transfer in bacteria and non-animal eukaryotic cells such as fungus, algae and plants....
 with the CXCR2 mutant
Mutant

A mutant is an individual, organism, or new genetic character arising or resulting from an instance of mutation, which is a base-pair sequence change within the DNA of a gene or chromosome of an organism resulting in the creation of a new character or Trait not found in the wild type....
 underwent a malignant transformation
Malignant transformation

Malignant transformation is the process by which cells acquire the properties of cancer. This may occur as a primary process in normal tissue, or secondarily as malignant degeneration of a previously existing benign tumor....
. The result of the point mutation
Point mutation

A point mutation, or single base substitution, is a type of mutation that causes the replacement of a single base nucleotide with another nucleotide of the genetic material, DNA or RNA....
 was the expression
Gene expression

Gene expression is the process by which inheritable information from a gene, such as the DNA sequence, is made into a functional gene product, such as protein or RNA....
 of CXCR2 in an active conformation, despite the absence of chemokine-binding (the CXCR2 mutant is said to be "constitutively active").

Receptor tyrosine kinases

Receptor tyrosine kinase
Receptor tyrosine kinase

Receptor tyrosine kinases s are the high dissociation constant#Protein-Ligand binding cell surface receptors for many polypeptide growth factors, cytokines and hormones....
s (RTKs) are transmembrane proteins with an intracellular kinase
Kinase

In chemistry and biochemistry, a kinase, alternatively known as a phosphotransferase, is a type of enzyme that transfers phosphate groups from High-energy phosphate donor molecules, such as adenosine triphosphate, to specific target molecules ; the process is termed phosphorylation ...
 domain and an extracellular domain that binds ligand
Ligand

In chemistry, a ligand is either an atom, ion, or molecule that bonds to a central metal, generally involving formal donation of one or more of its electrons....
. There are many RTK proteins that are classified into subfamilies depending on their structural properties and ligand specificity. These include many growth factor
Growth factor

The term growth factor refers to a naturally occurring protein capable of stimulating cellular growth, proliferation and cellular differentiation....
 receptors such as insulin receptor
Insulin

Insulin is a hormone with extensive effects on both metabolism and several other body systems . Insulin causes most of the body's cells to take up glucose from the blood , storing it as glycogen in the liver and muscle, and stops use of fat as an energy source....
 and the insulin-like growth factor receptors, and many others receptors. To conduct their biochemical signals, RTKs need to form dimer
Dimer

File:Carboxylic acid dimers.pngA dimer is a chemical or biological entity consisting of two identical subunits called monomers, which are held together by either intramolecular forces or weaker intermolecular forces....
s in the plasma membrane. The dimer is stabilized by ligand binding by the receptor. Interaction between the two cytoplasmic domains of the dimer is thought to stimulate autophosphorylation of tyrosine
Tyrosine

Tyrosine or 4-hydroxyphenylalanine, is one of the 20 amino acids that are used by cell to protein biosynthesis proteins. This is a non-essential amino acid and it is found in casein....
s within the cytoplasmic tyrosine kinase domains of the RTKs causing their conformational changes. The kinase domain of the receptors is subsequently activated, initiating signaling cascades of phosphorylation
Phosphorylation

Phosphorylation is the addition of a phosphate group to a protein or other organic molecule. Protein phosphorylation in particular plays a significant role in a wide range of cellular processes....
 of downstream cytoplasmic molecules. These signals are essential to various cellular processes, such as control of cell growth, differentiation, metabolism
Metabolism

Metabolism is the set of chemical reactions that occur in living organisms in order to maintain life. These processes allow organisms to grow and reproduce, maintain their structures, and respond to their environments....
, and migration
Cell migration

Cell migration is a central process in the development and maintenance of multicellular organisms. Tissue formation during embryogenesis, wound healing and immune systems all require the orchestrated movement of cells in a particular direction to a specific location....
.

As is the case with G-Protein-coupled receptors, proteins that bind GTP play a major role in transmission of signal from the activated RTK into the cell. In this case, the G proteins are members of the Ras
Ras

In the field of molecular biology, Ras is the name of a protein, the gene that encodes it, and the family and superfamily of proteins to which it belongs....
, Rho
Rho

Rho may refer to:*Rho , a letter of the Greek alphabet, upper case ?, lower case ?...
, and Raf families, referred to collectively as small G proteins. These proteins act as molecular switches that are usually tethered to membranes by isoprenyl groups linked to their carboxyl ends. Thus, upon activation, they are responsible for the recruitment of proteins to specific membrane subdomains where they participate in signaling. Activated RTKs, in turn, activate small G proteins, which in turn activate Guanine Nucleotide Exchange Factor
Guanine nucleotide exchange factor

Guanine nucleotide exchange factors are components of intracellular cell signalling. They function as activators of small GTPases . G proteins function as molecular switches, where the resting state they are bound to Guanosine diphosphate and their activation requires the dissociation of GDP and binding of guanosine triphosphate , which ex...
s, such as SOS1
SOS1

Son of sevenless homolog 1 , also known as SOS1, is a human gene.Recent studies also show that mutations in Sos1 can cause Noonan syndrome....
. Once activated, these exchange factors can activate many more small G-proteins, thus amplifying the receptors initial signal.

As with the mutation
Mutation

In biology, mutations are changes to the nucleotide sequence of the genetic material of an organism. Mutations can be caused by copying errors in the genetic material during cell division, by exposure to ultraviolet or ionizing radiation, chemical mutagens, or virus , or can be induced by the organism, itself, by cellular processes such as s...
 of G-protein coupled receptors, the mutation of certain RTK genes
Gênes

G?nes is the name of a d?partement in France of the First French Empire in present Italy. It was named after the city Genoa. It was formed in 1805, when Napoleon Bonaparte occupied the Republic of Genoa....
 can result in the expression
Gene expression

Gene expression is the process by which inheritable information from a gene, such as the DNA sequence, is made into a functional gene product, such as protein or RNA....
 of receptors that exist in a constitutively-activate state. Such mutated RTK genes may act as oncogenes, genes that contribute to the initiation or progression of cancer
Cancer

Cancer is a class of diseases in which a group of cell display uncontrolled growth , invasion , and sometimes metastasis . These three malignant properties of cancers differentiate them from benign tumors, which are self-limited, do not invade or metastasize....
.

Integrins

Integrins are produced by a wide variety of cell type
Cell type

A cell type is a distinct morphological or functional form of cell . When a cell switches state from one cell type to another, it undergoes cellular differentiation....
s, and play a role in the attachment of a cell to the extracellular matrix
Extracellular matrix

In biology, the extracellular matrix is the extracellular part of animal tissue that usually provides structural support to the animal Cell in addition to performing various other important functions....
 (ECM) and to other cells, and in the signal transduction of signals received from extracellular matrix components such as fibronectin
Fibronectin

Fibronectin is a high-molecular weight extracellular matrix glycoprotein that binds to cell membrane-spanning receptor proteins called integrins....
, collagen
Collagen

Collagen is the main protein of connective tissue in animals and the most abundant protein in mammals, making up about 25% to 35% of the whole-body protein content....
, and laminin
Laminin

Laminin is a protein found in the extracellular matrix, the sheets of protein that form the substrate of all internal organs also called the basement membrane....
. Ligand-binding to the extracellular domain of integrins induces a conformational change within the protein and a clustering of the protein at the cell surface, in order to initiate signal transduction. Integrins lack kinase activity, and integrin-mediated signal transduction is achieved through a variety of intracellular protein kinases and adaptor molecules such as integrin-linked kinase
Integrin-linked kinase

Integrin-linked kinase is a 59kDa protein originally identified while conducting a yeast-two hybrid screen with integrin ?1 as the bait protein ....
 (ILK), focal-adhesion kinase (FAK), talin
Talin

Talin is a city in the Aragatsotn province of Armenia. It has a population of 5,371....
, paxillin
Paxillin

Paxillin is a signal transduction adaptor protein and should not be confused with the neurotoxin paxilline....
, parvins, p130Cas, Src-family kinases, and GTPase
GTPase

GTPases are a large family of hydrolase enzymes that can bind and hydrolysis Guanosine triphosphate. The GTP binding and hydrolysis takes place in the highly Conservation G domain common to all GTPases....
s of the Rho
Rho

Rho may refer to:*Rho , a letter of the Greek alphabet, upper case ?, lower case ?...
 family, the main protein coordinating signal transduction being ILK
Integrin-linked kinase

Integrin-linked kinase is a 59kDa protein originally identified while conducting a yeast-two hybrid screen with integrin ?1 as the bait protein ....
. As shown in the overview to the right, cooperative integrin and receptor tyrosine kinase signaling determine cellular survival, apoptosis
Apoptosis

Apoptosis is the process of programmed cell death that may occur in multicellular organisms. Programmed Cell death involves a series of biochemical events leading to a characteristic cell Morphology and death, in more specific terms, a series of biochemical events that lead to a variety of morphological changes, including Bleb , changes...
, proliferation
Proliferation

The word proliferation can refer to:*Nuclear proliferation*Chemical weapon proliferation*Cell growth* The proliferative phase of wound healing...
, and differentiation
Differentiation

Differentiation can mean the following:* The act of finding the derivative in mathematics* Differentiated instruction in education,* Cellular differentiation in biology...
.

Important differences exist between integrin-signaling in circulating blood cells and that in non-circulating blood cells such as epithelial cells. Integrins at the cell-surface of circulating cells are inactive under normal physiological conditions. For example, cell-surface integrins on circulating leukocytes are maintained in an inactive state in order to avoid epithelial cell attachment. Only in response to appropriate stimuli are leukocyte integrins converted into an active form, such as those received at the site of an inflammatory response
Inflammation

Inflammation is the complex biological response of Blood vessel tissues to harmful stimuli, such as pathogens, damaged cells, or irritants. It is a protective attempt by the organism to remove the injurious stimuli as well as initiate the healing process for the tissue....
. In a similar manner, it is important that integrins at the cell surface of circulating platelets are kept in an inactive state under normal conditions, in order to avoid thrombosis
Thrombosis

Thrombosis is the formation of a blood clot inside a blood vessel, obstructing the flow of blood through the circulatory system. When a blood vessel is injured, the body uses platelets and fibrin to form a blood clot, because the first step in repairing it is to prevent loss of blood....
. Epithelial cells, in contrast, have active integrins at their cell surface under normal conditions, which help to maintain their stable adhesion to underlying stromal cells, which provide appropriate signals in order to maintain their survival and differentiation.

Toll-like receptors

When activated, Toll-like receptors (TLRs) recruit adapter molecules within the cytoplasm of cells in order to propagate a signal. Four adapter molecules are known to be involved in signaling. These proteins are known as MyD88
Myd88

Myeloid differentiation primary response gene is a protein which in humans is encoded by the MYD88 gene....
, Tirap
Tirap

Tirap can refer to:* Tirap district, a district in Arunachal Pradesh bordering Myanmar, Nagaland and Assam* Tirap River, the river that flows in Tirap district...
 (also called Mal), Trif
Trif

TIR-domain-containing adapter-inducing interferon-? is is an adapter in responding to activation of toll-like receptors . It mediates the rather delayed cascade of two TLR-associated signaling cascades, where the other one is dependent upon a MyD88 adapter....
, and Tram. The adapters activate other molecules within the cell, including certain protein kinases (IRAK1
IRAK1

Interleukin-1 receptor-associated kinase 1, also known as IRAK1, is a human gene.ReferencesFurther reading...
,IRAK4, TBK1, and IKKi
Ikki

The term Ikki can refer to:*In Japanese history, leagues of samurai, farmers, and clergy who engaged in common defense against shogunal forces and greater lords, initiating large and destructive agrarian uprisings....
) that amplify the signal, and ultimately lead to the induction or suppression of genes that orchestrate the inflammatory response. In all, thousands of genes are activated by TLR signaling, and, together, the TLRs constitute one of the most powerful and important gateways for gene modulation.

Ligand-gated ion channel receptors

A ligand-activated ion channel will recognize its ligand, and then undergo a structural change that opens a gap (channel) in the plasma membrane through which ions can pass. These ions will then relay the signal. An example for this mechanism is found in the receiving cell, or post-synaptic cell of a neural synapse.

By contrast, other ion channels open in response to a change in cell potential, that is, the difference of the electrical charge
Electric charge

Electric charge is a fundamental conserved property of some subatomic particles, which determines their electromagnetic interaction. Electrically charged matter is influenced by, and produces, electromagnetic fields....
 across the membrane. In neuron
Neuron

Neurons are responsive cell in the nervous system that process and transmit information by electrochemical Signal . They are the core components of the brain, the vertebrate spinal cord, the invertebrate ventral nerve cord, and the peripheral nerves....
s, this mechanism underlies the action potential
Action potential

An action potential is a self-regenerating wave of electrochemical activity that allows nerve cells to carry a signal over a distance. It is the primary electrical signal generated by nerve cells, and arises from changes in the permeability of the nerve cell's axonal Cell membranes to specific ions....
s that travel along nerve
Nerve

A nerve is an enclosed, cable-like bundle of Peripheral nervous system axons . A nerve provides a common pathway for the electrochemical nerve impulses that are transmitted along each of the axons....
s. The influx of ions that occurs in response to ligand-gated ion channels often induce action potentials by depolarizing the membrane of the post-synaptic cells, which results in the wave-like opening of voltage-gated ion channels. In addition, calcium ions are also commonly allowed into the cell during ligand-induced ion channel opening. This calcium can act as a classical second messenger, setting in motion signal transduction cascades and altering the cellular physiology of the responding cell. This may result in strengthening of the synapse between the pre- and post-synaptic cells by remodeling the dendritic spines involved in the synapse.

Intracellular receptors


Intracellular receptors include nuclear receptor
Nuclear receptor

In the field of molecular biology, nuclear receptors are a class of proteins found within the interior of cells that are responsible for sensing the presence of hormone and certain other molecules....
s and cytoplasmic receptors, and are soluble proteins localized within the nucleoplasm
Nucleoplasm

Similar to the cytoplasm of a cell , the cell nucleus contains nucleoplasm or nuclear sap. The nucleoplasm is one of the types of protoplasm, and it is enveloped by the nuclear membrane or nuclear envelope....
 or the cytoplasm
Cytoplasm

The cytoplasm is the part of a Cell that is enclosed within the plasma membrane. In eukaryote cells the cytoplasm contains organelles, such as mitochondrion, that are filled with liquid kept separate from the rest of the cytoplasm by biological membranes....
, respectively. The typical ligands for nuclear receptors are lipophilic
Lipophilic

Lipophilicity, , refers to the ability of a chemical compound to dissolve in fats, oils, lipids, and non-polar solvents such as hexane or toluene....
 hormones, with steroid
Steroid

A steroid is a terpenoid lipid characterized by a carbon skeleton with four fused rings, generally arranged in a 6-6-6-5 fashion.Steroids vary by the functional groups attached to these rings and the oxidation state of the rings....
 hormones (for example, testosterone
Testosterone

Testosterone is a steroid hormone from the androgen group. In mammals, testosterone is primarily secreted in the testis of males and the ovaries of females, although small amounts are also secreted by the adrenal glands....
, progesterone
Progesterone

Progesterone is a C-21 steroid hormone involved in the female menstrual cycle, pregnancy and embryogenesis of humans and other species. Progesterone belongs to a class of hormones called progestogens, and is the major naturally occurring human progestogen....
, and cortisol
Cortisol

Cortisol is a corticosteroid hormone or glucocorticoid produced by the adrenal cortex, that is part of the adrenal gland . It is usually referred to as the "stress hormone" as it is involved in response to stress and anxiety, controlled by Corticotropin-releasing hormone....
) and derivatives of vitamin
Vitamin

A vitamin is an organic compound required as a nutrient in tiny amounts by an organism. A compound is called a vitamin when it cannot be biosynthesis in sufficient quantities by an organism, and must be obtained from the diet....
 A and D among them. In order to reach its receptor and initiate signal transduction, the hormone must pass through the plasma membrane, usually by passive diffusion. The nuclear receptors are ligand
Ligand

In chemistry, a ligand is either an atom, ion, or molecule that bonds to a central metal, generally involving formal donation of one or more of its electrons....
-activated transcription
Transcription (genetics)

Transcription is the synthesis of RNA under the direction of DNA. RNA synthesis, or transcription, is the process of transcribing DNA nucleotide sequence information into RNA sequence information....
 activators; on binding with the ligand (the hormone), the ligands will pass through the nuclear membrane into the nucleus
Cell nucleus

In cell biology, the nucleus , also sometimes referred to as the "control center", is a membrane-enclosed organelle found in all eukaryote cell ....
 and enable the transcription of a certain gene
Gene

A gene is the basic unit of heredity in a living organism. All living things depend on genes. Genes hold the information to build and maintain their cell and pass genetic trait to offspring....
 and, thus, the production of a protein.

The nuclear receptors that were activated by the hormones attach at the DNA at receptor-specific Hormone-Responsive Elements (HREs), DNA sequences that are located in the promoter
Promoter

In biology, a promoter is a region of DNA that facilitates the Transcription of a particular gene. Promoters are typically located near the genes they regulate, on the same strand and Upstream and downstream ....
 region of the genes that are activated by the hormone-receptor complex. As this enables the transcription of the according gene, these hormones are also called inductors of gene expression
Gene expression

Gene expression is the process by which inheritable information from a gene, such as the DNA sequence, is made into a functional gene product, such as protein or RNA....
. The activation of gene transcription is much slower than signals that directly affect existing proteins. As a consequence, the effects of hormones that use nucleic receptors are usually long-term. Although the signal transduction via these soluble receptors involves only a few proteins, the details of gene regulation are yet not well understood. The nucleic receptors all have a similar, modular structure:

N-AAAABBBBCCCCDDDDEEEEFFFF-C


where CCCC is the DNA-binding domain that contains zinc finger
Zinc finger

A zinc finger is a large superfamily of protein domains that can bind to DNA. A zinc finger consists of two Antiparallel Beta_strand, and an alpha helix....
s, and EEEE the ligand-binding domain. The latter is also responsible for dimerization of most nuclearic receptors prior to DNA binding. As a third function, it contains structural elements that are responsible for transactivation
Transactivation

Transactivation is an increased rate of gene expression triggered either by biological processes or by artificial means....
, used for communication with the translational apparatus. The zinc fingers in the DNA-binding domain stabilize DNA binding by holding contact to the phosphate backbone of the DNA. The DNA sequences that match the receptor are usually hexameric repeats, either normal, inverted, or everted. The sequences are quite similar, but their orientation and distance are the parameters by which the DNA-binding domains of the receptors can tell them apart.

Steroid receptors are a subclass of nuclear receptors, located primarily within the cytosol. In the absence of steroid hormone, the receptors cling together in a complex called an aporeceptor complex, which also contains chaperone proteins (also known as heatshock proteins or Hsps). The Hsps are necessary to activate the receptor by assisting the protein to fold
Protein folding

Protein folding is the physical process by which a polypeptide folds into its characteristic and functional protein structure.Each protein begins as a polypeptide, translated from a sequence of mRNA as a linear chain of amino acids....
 in a way such that the signal sequence
Signal sequence

Signal sequence can refer to any of the following:*Protein targeting*Signal peptide*DNA uptake signal sequence...
 that enables its passage into the nucleus is accessible.
Steroid receptors can also have a repressive effect on gene expression, when their transactivation domain is hidden so it cannot activate transcription. Furthermore, steroid receptor activity can be enhanced by phosphorylation of serine
Serine

Serine is an organic compound with the chemical formula hydrogenoxygen2carbonCHCH2OH....
 residues at their N-terminal end, as a result of another signal transduction pathway, for example, a by a growth factor
Growth factor

The term growth factor refers to a naturally occurring protein capable of stimulating cellular growth, proliferation and cellular differentiation....
. This behaviour is called crosstalk
Crosstalk (biology)

In biology, the term crosstalk refers to the phenomenon that signal components in signal transduction can be shared between different signal pathways and responses to a signal inducing condition can activate multiple responses in the cell /the organism....
.

RXR- and orphan-receptors
Retinoic acid receptor

The retinoic acid receptor is a type of nuclear receptor which is activated by both retinoic acid and retinoic acid. There are three retinoic acid receptors , retinoic acid receptor alpha, retinoic acid receptor beta, and retinoic acid receptor gamma encoded by the , , genes respectively....
  These nuclear receptors can be activated by

  • a classic endocrine-synthesized hormone that entered the cell by diffusion
  • a hormone that was built within the cell (for example, retinol
    Retinol

    Retinol, the animal form of vitamin A, is a fat-soluble vitamin important in visual system and bone growth. It is also a Terpenoid. Retinol is among the most useable forms of vitamin A, which also include Retinal , Retinoic acid and retinyl ester ....
    ) from a precursor
    Protein precursor

    A protein precursor, also called a pro-protein or pro-peptide, is an inactive protein that can be turned into an active form by posttranslational modification....
     or prohormone
    Prohormone

    A prohormone is a substance that is a precursor to a hormone, usually having minimal hormonal effect by itself. The term has been used in medical science since the middle of the 20th century....
    , which can be brought to the cell through the bloodstream
  • a hormone that was completely synthesized within the cell, for example, prostaglandin
    Prostaglandin

    A prostaglandin is any member of a group of lipid compounds that are derived enzymatically from fatty acids and have important functions in the animal body....
    .


These receptors are located in the nucleus and are not accompanied by chaperone proteins. In the absence of hormone, they bind to their specific DNA sequence, repressing the gene. Upon activation by the hormone, they activate the transcription of the gene that they were repressing.

Certain intracellular receptors of the immune system
Immune system

An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
 are examples of cytoplasmic receptors. Recently-identified NOD like receptors
Pattern recognition receptor

Pattern recognition receptors, or PRRs, are proteins expressed by cells of the immune system to identify molecules associated with microbial pathogens or cellular stress....
 (NLRs) reside in the cytoplasm of specific eukaryotic cells and interact with particular ligands, such as microbial molecules, using a leucine-rich repeat
Leucine-rich repeat

A leucine-rich repeat is a protein structural motif that forms an a/? horseshoe tertiary structure. It is composed of repeating 20-30 amino acid stretches that are unusually rich in the hydrophobic amino acid leucine....
 (LRR) motif that is similar to the ligand-binding motif of the extracellular receptors known as TLRs. Some of these molecules (e.g., NOD1 and NOD2) interact with an enzyme called RICK kinase (or RIP2 kinase) that activates NF-?B signaling, whereas others (e.g., NALP3) interact with inflammatory caspase
Caspase

Caspases, or cysteine-aspartic acid proteases, are a family of cysteine proteases, which play essential roles in apoptosis , necrosis and inflammation....
s (e.g., caspase 1
Caspase 1

Caspase 1 is an enzyme that proteolysis cleaves other proteins, such as the Protein precursor forms of the inflammatory cytokines interleukin 1 and interleukin 18, into active mature peptides....
) and initiate processing of particular cytokine
Cytokine

Cytokines are a category of signaling molecules that, like hormones and neurotransmitters, are used extensively in cell communication. They are proteins, peptides or glycoproteins....
s (e.g., interleukin-1ß). Similar receptors exist inside plant cells and are called Plant R Proteins. Another type of cytoplasmic receptor also has a role in immune surveillance. These receptors are known as RNA Helicases and include RIG-I, MDA5, and LGP2.

Second messengers


Intracellular signal transduction is largely carried out by second messenger molecules.

Ca2+ concentration is usually maintained at a very low level in the cytosol by sequestration in the smooth endoplasmic reticulum and the mitochondria. Ca2+ release from the endoplasmic reticulum into the cytosol
Cytosol

The cytosol or intracellular fluid is the liquid found inside cell . In eukaryotes this liquid is separated by cell membranes from the contents of the organelles suspended in the cytosol, such as the mitochondrial matrix inside the mitochondrion....
 results in the binding of the released Ca2+ to signaling proteins that are then activated. There are two combined receptor/ion channel proteins that perform the task of controlled transport of Ca2+:

  • The InsP3-receptor will transport Ca2+ upon interaction with inositol triphosphate
    Inositol triphosphate

    Inositol trisphosphate or inositol 1,4,5-trisphosphate , together with diglyceride, is a secondary messenger molecule used in signal transduction in cell s....
     (thus the name) on its cytosolic side. It consists of four identical subunits.
  • The ryanodine receptor
    Ryanodine receptor

    Ryanodine receptors form a class of intracellular calcium channels in various forms of excitable animal tissue like muscles and neurons. It is the major cellular mediator of calcium-induced calcium release in animal cell s....
     is named after the plant
    Plant

    Plants are Life organisms belonging to the Kingdom Plantae. They include familiar organisms such as trees, herbs, bushes, grasses, vines, ferns, mosses, and green algae....
     alkaloid
    Alkaloid

    Alkaloids are naturally occurring chemical compounds containing base nitrogen atoms. The name derives from the word alkaline and was used to describe any nitrogen-containing base....
     ryanodine
    Ryanodine

    Ryanodine is a poisonous alkaloid found in the South American plant Ryania speciosa . It was originally used as an insecticide.The compound has extremely high affinity to the ryanodine receptor, a group of calcium channels found in striated muscle and heart muscle cells....
    . It is similar to the InsP3 receptor and stimulated to transport Ca2+ into the cytosol by recognizing Ca2+ on its cytosolic side, thus establishing a feedback mechanism; a small amount of Ca2+ in the cytosol near the receptor will cause it to release even more Ca2+. It is especially important in neuron
    Neuron

    Neurons are responsive cell in the nervous system that process and transmit information by electrochemical Signal . They are the core components of the brain, the vertebrate spinal cord, the invertebrate ventral nerve cord, and the peripheral nerves....
    s and muscle cells. In heart
    Heart

    The heart is a muscle organ in all vertebrates responsible for pumping blood through the blood vessels by repeated, rhythmic contractions, or a similar structure in annelids, mollusks, and arthropods....
     and pancreas
    Pancreas

    The pancreas is a gland Organ in the digestive system and endocrine system of vertebrates. It is both an endocrine gland , as well as an exocrine gland, secreting pancreatic juice containing Digestion enzymes that pass to the small intestine....
     cells, another second messenger (cyclic-ADP ribose) takes part in the receptor activation. The localized and time-limited activity of Ca2+ in the cytosol is also called a Ca2+ wave. Once released into the cytosol from intracellular stores or extracellular sources, Ca2+ acts as a signal molecule within the cell. This works by tightly limiting the time and space when Ca2+ is free (and thus active). Therefore, the concentration of free Ca2+ within the cell is usually very low; it is stored within organelle
    Organelle

    In cell biology, an organelle is a specialized subunit within a cell that has a specific function, and is usually separately enclosed within its own lipid membrane....
    s, usually the endoplasmic reticulum
    Endoplasmic reticulum

    The endoplasmic reticulum is a eukaryote organelle that forms an interconnected network of tubules, vesicle , and cisternae within cell . The lacey membranes of the endoplasmic reticulum were first seen by Keith R....
     (sarcoplasmic reticulum in muscle cells), where it is bound to molecules like calreticulin
    Calreticulin

    Calreticulin is a multifunctional protein that binds calcium ions , rendering it inactive. The Ca2+ is bound with low Chemical affinity, but high capacity, and can be released on a signal ....
    .


Ca2+ is used in a multitude of processes, among them muscle
MUSCLE

MUSCLE is public domain, multiple sequence alignment software for protein and nucleotide sequences.MUSCLE is integrated into UGENE bioinformatics tool as a plugin....
 contraction, release of neurotransmitter from nerve endings, vision
Visual perception

Visual perception is the ability to interpret information from visible light reaching the eye. The resulting perception is also known as eyesight, sight or vision....
 in retina
Retina

The vertebrate retina is a light sensitive tissue lining the inner surface of the eye. The optics of the eye create an image of the visual world on the retina, which serves much the same function as the film in a camera....
 cells, proliferation, secretion
Secretion

Secretion is the process of, elaborating and releasing Chemical compound from a cell , or a secreted chemical substance or amount of substance. In contrast to excretion, the substance may have a certain function, rather than being a waste product....
, cytoskeleton
Cytoskeleton

The cytoskeleton is a cellular "scaffolding" or "skeleton" contained within the cytoplasm. The cytoskeleton is present in all cells; it was once thought this structure was unique to eukaryotes, but recent research has identified the prokaryotic cytoskeleton....
 management, cell migration
Cell migration

Cell migration is a central process in the development and maintenance of multicellular organisms. Tissue formation during embryogenesis, wound healing and immune systems all require the orchestrated movement of cells in a particular direction to a specific location....
, gene expression
Gene expression

Gene expression is the process by which inheritable information from a gene, such as the DNA sequence, is made into a functional gene product, such as protein or RNA....
, and metabolism
Metabolism

Metabolism is the set of chemical reactions that occur in living organisms in order to maintain life. These processes allow organisms to grow and reproduce, maintain their structures, and respond to their environments....
. The three main pathways that lead to Ca2+ activation are :

  1. G protein
    G protein

    G proteins, short for guanine nucleotide-binding proteins, are a family of proteins involved in second messenger cascades.G proteins are so called because they function as "molecular switches," alternating between an inactive guanosine diphosphate and active guanosine triphosphate bound state, ultimately going on to regulate down...
    -regulated pathways
  2. Pathways regulated by receptor-tyrosine kinase
    Tyrosine kinase

    A tyrosine kinase is an enzyme that can transfer a phosphate group from Adenosine triphosphate to a tyrosine residue in a protein. Tyrosine kinases are a subgroup of the larger class of protein kinases....
    s
  3. Ligand- or current-regulated ion channel
    Ion channel

    Ion channels are pore-forming proteins that help establish and control the small voltage gradient across the plasma membrane of all living cell s by allowing the flow of ions down their electrochemical gradient....
    s


There are two different ways by which Ca2+ can regulate proteins:

  1. A direct recognition of Ca2+ by the protein
  2. Binding of Ca2+ in the active site
    Active site

    The active site of an enzyme contains the catalysis and binding sites. The structure and chemical properties of the active site allow the recognition and binding of the substrate ....
     of an enzyme
    Enzyme

    Enzymes are biomolecules that catalysis chemical reactions. Almost all enzymes are proteins. In enzymatic reactions, the molecules at the beginning of the process are called Substrate , and the enzyme converts them into different molecules, the products....
    .


One of the best-studied interactions of Ca2+ with a protein is the regulation of calmodulin
Calmodulin

Calmodulin is a calcium-binding protein expressed in all eukaryotic cells. It can bind to and regulate a number of different protein targets, thereby affecting many different cellular functions....
 by Ca2+. Calmodulin itself can regulate other proteins, or be part of a larger protein (for example, phosphorylase kinase
Phosphorylase kinase

Phosphorylase kinase is a serine/threonine-specific protein kinase which converts glycogen phosphorylase b to glycogen phosphorylase a, activating it to release glucose-1-phosphate from glycogen...
). The Ca2+/calmodulin complex plays an important role in proliferation, mitosis
Mitosis

Mitosis is the process in which a eukaryotic cell separates the chromosomes in its cell nucleus, into two identical sets in two daughter nuclei....
, and neural signal transduction.

Lipophilic second messenger molecules - These molecules are all derived from lipids that normally reside in cellular membranes. Enzymes stimulated by activated receptors modify these lipids, converting them into second messengers. One example of lipophilic
Lipophilic

Lipophilicity, , refers to the ability of a chemical compound to dissolve in fats, oils, lipids, and non-polar solvents such as hexane or toluene....
 second messenger molecule is diacylglycerol
Diglyceride

A diglyceride, or a diacylglycerol , is a glyceride consisting of two fatty acid chains covalent bond to a glycerol molecule through ester linkages....
, required for the activation of protein kinase C
Protein kinase C

Protein kinase C is a family of protein kinases consisting of ~10 isozymes. They are divided into three subfamilies, based on their second messenger requirements: conventional , novel, and atypical....
. Others are ceramide
Ceramide

Ceramides are a family of lipid molecules. A ceramide is composed of sphingosine and a fatty acid. Ceramides are found in high concentrations within the cell membrane of cells....
, the eicosanoid
Eicosanoid

In biochemistry, eicosanoids are lipid signaling made by oxygenation of twenty-carbon essential fatty acids, .They exert complex control over many bodily systems, mainly in inflammation or Immune system, and as messengers in the central nervous system....
s, and lysophosphatidic acid
Lysophosphatidic acid

Lysophosphatidic acid is a phospholipid derivative that acts as a potent lipid signaling molecule. There are a number of potential routes to its biosynthesis, but the most well-characterized is by the action of a lysophospholipase D called autotaxin, which removes the choline group from lysophosphatidylcholine....
.

Nitric oxide (NO) as second messenger - The gas nitric oxide
Nitric oxide

Nitric oxide or nitrogen monoxide is a chemical compound with chemical formula NitrogenOxygen. This gas is an important signaling molecule in the body of mammals, including humans, and is an extremely important intermediate in the chemical industry....
 is a free radical that diffuses through the plasma membrane and affects nearby cells. NO is made from arginine
Arginine

Arginine is an a-amino acid. The Optical isomerism is one of the 20 most common natural amino acids. Its codons are CGU, CGC, CGA, CGG, AGA, and AGG....
 and oxygen by the enzyme NO synthase, with citrulline
Citrulline

The organic compound citrulline is an a-amino acid. Its name is derived from citrullus, the Latin word for watermelon, from which it was first isolated in 1930....
 as a by-product. NO works mainly through activation of its target receptor, the enzyme soluble guanylate cyclase, which, when activated, produces the second messenger cyclic-guanosine monophosphate (cGMP). NO can also act through covalent modification of proteins or their metal cofactors. Some of these modifications are reversible and work through a redox
Redox

Redox describes all chemical reactions in which atoms have their oxidation number changed.This can be either a simple redox process such as the oxidation of carbon to yield carbon dioxide or the reduction of carbon by hydrogen to yield methane , or it can be a complex process such as the oxidation of sugar in the human body through a ser...
 mechanism. In high concentrations, NO is toxic, and is thought to be responsible for some damage after a stroke
Stroke

A stroke is the rapidly developing loss of brain function due to a disturbance in the blood supply to the brain. According to the National Stroke Association, a "stroke" occurs when a blood clot blocks and artery or a blood vessel breaks, interrupting blood flow to an area of the brain....
. NO serves multiple functions. These include:

  1. Relaxation of blood vessel
    Blood vessel

    The blood vessels are the part of the circulatory system that transport blood throughout the body. There are three major types of blood vessels: the artery, which carry the blood away from the heart, the capillary, which enable the actual exchange of water and chemicals between the blood and the tissues; and the veins, which carry blood from...
    s
  2. Regulation of exocytosis
    Exocytosis

    Exocytosis is the durable process by which a cell directs the contents of secretory Vesicle_ out of the cell membrane. These membrane-bound vesicles contain soluble proteins to be secreted to the extracellular environment, as well as membrane proteins and lipids that are sent to become components of the cell membrane....
     of neurotransmitter
    Neurotransmitter

    Neurotransmitters are chemistry which relay, amplify and modulate signals between a neuron and another cell . Neurotransmitters are packaged into vesicles that cluster beneath the membrane on the presynaptic side of a synapse, and are released into the synaptic cleft, where they bind to receptors in the membrane on the postsynaptic side of...
    s
  3. Cellular immune response
    Immune system

    An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
  4. Modulation of the Hair Cycle
    Baldness

    Baldness involves the state of lacking hair where it often grows, especially on the head. The most common form of baldness is a progressive hair thinning condition called androgenic alopecia or "male pattern baldness" that occurs in adult male humans and other species....
  5. Production and maintenance of penile erection
    Erection

    An erection of the penis, clitoris or a nipple is its enlarged and firm state. It is the result of a complex interaction of psychological, neural, vascular and endocrine factors, and is usually, though not exclusively, associated with sexual arousal....
    s
  6. Activation of apoptosis by initiating signals that lead to H2AX phosphorylation.


See also


  • Two-component regulatory system in microbes
  • Functional selectivity
    Functional Selectivity

    Functional selectivity is the ligand-dependent selectivity for certain signal transduction pathways in one and the same receptor . This can be present when a receptor has several possible signal transduction pathways....
  • G protein-coupled receptor
    G protein-coupled receptor

    G protein-coupled receptors , also known as seven transmembrane domain receptors, 7TM receptors, heptahelical receptors, serpentine receptor, and G protein-linked receptors , comprise a large protein family of transmembrane receptors that sense molecules outside the Cell and activate inside signal transductio...
     -- GTPase
    GTPase

    GTPases are a large family of hydrolase enzymes that can bind and hydrolysis Guanosine triphosphate. The GTP binding and hydrolysis takes place in the highly Conservation G domain common to all GTPases....
    s -- Protein phosphatase
  • MAPK/ERK pathway
    MAPK/ERK pathway

    The MAPK/ERK pathway is a signal transduction pathway that couples intracellular responses to the binding of growth factors to cell surface Receptor s....
     - a signal transduction pathway linking cell surface receptors to transcription factors
  • Redox signaling
    Redox signaling

    Redox signaling is the process wherein free radicals, reactive oxygen species , and other electronically-activated species act as messengers in biological systems....


Further reading


Non-technical
  • Werner R. Loewenstein, The Touchstone of Life: Molecular Information, Cell Communication, and the Foundations of Life, Oxford University Press, 1999, ISBN 0-19-514057-5


Technical

  • Gomperts, Kramer, Tatham, "Signal Transduction", AP/Elsevier [2002], ISBN 0122896319. Reference book, for more information: http://www.cellbiol.net .
  • Gerhard Krauss, Biochemistry of Signal Transduction and Regulation, Wiley-VCH, 1999, ISBN 3-527-30378-2
  • John T. Hancock, Cell Signalling, Addison-Wesley, 1998 ISBN 0-582-31267-1


External links

  • - A database about signal transduction pathways
  • , from the journal Science, published by AAAS.
  • , from Nature Publishing Group
  • - Signal transduction pathway mining in PubMed abstracts