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Pathogen



 
 
A pathogen (from Greek p???? pathos "suffering, passion", and ?????ľa? (?e?-) gignomai (gen-) "I give birth to"), infectious agent, or (more commonly) germ, is a biological agent
Biological agent

A biological agent is an infectious disease or toxin that can be used in bioterrorism or biological warfare. There are more than 1200 different kinds of biological agents....
 that causes disease
Disease

A disease or medical condition is an abnormal condition of an organism that impairs bodily functions, associated with specific symptoms and Medical signs....
 or illness
Illness

Illness can be defined as a state of poor health.It is sometimes considered a synonym for disease. Others maintain that fine distinctions exist....
 to its host
Host (biology)

In biology, a host is an organism that harbors a virus or parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter....
. There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination
Soil contamination

Soil contamination is caused by the presence of man-made chemicals or other alteration in the natural soil environment. This type of contamination typically arises from the rupture of underground storage tanks, application of pesticides, percolation of contaminated surface water to subsurface strata, oil and fuel dumping, leaching of wastes...
 has the longest or most persistent potential for harboring a pathogen.






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A pathogen (from Greek p???? pathos "suffering, passion", and ?????ľa? (?e?-) gignomai (gen-) "I give birth to"), infectious agent, or (more commonly) germ, is a biological agent
Biological agent

A biological agent is an infectious disease or toxin that can be used in bioterrorism or biological warfare. There are more than 1200 different kinds of biological agents....
 that causes disease
Disease

A disease or medical condition is an abnormal condition of an organism that impairs bodily functions, associated with specific symptoms and Medical signs....
 or illness
Illness

Illness can be defined as a state of poor health.It is sometimes considered a synonym for disease. Others maintain that fine distinctions exist....
 to its host
Host (biology)

In biology, a host is an organism that harbors a virus or parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter....
. There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination
Soil contamination

Soil contamination is caused by the presence of man-made chemicals or other alteration in the natural soil environment. This type of contamination typically arises from the rupture of underground storage tanks, application of pesticides, percolation of contaminated surface water to subsurface strata, oil and fuel dumping, leaching of wastes...
 has the longest or most persistent potential for harboring a pathogen. Pathogen is known to cause diseases which attack the nerves.

The body contains many natural defenses against some of the common pathogens (such as Pneumocystis) in the form of the human immune system
Immune system

An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
 and by some "helpful" bacteria
Bacteria

The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
 present in the human body's normal flora. However, if the immune system or "good" bacteria is damaged in any way (such as by chemotherapy
Chemotherapy

Chemotherapy, in its most general sense, refers to treatment of disease by chemicals that kill cells, specifically those of micro-organisms or cancer....
, human immunodeficiency virus
HIV

Human immunodeficiency virus is a lentivirus that can lead to AIDS , a condition in humans in which the immune system begins to fail, leading to life-threatening opportunistic infections....
 (HIV), or antibiotic
Antibiotic

In common usage, an antibiotic is a substance or compound that kills or inhibits the growth of bacteria. Antibiotics belong to the group of antimicrobial compounds used to treat infections caused by microorganisms, including fungus and protozoa....
s being taken to kill other pathogens), pathogenic bacteria
Bacteria

The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
 that were being held at bay can proliferate and cause harm to the host. Such cases are called opportunistic infection
Opportunistic infection

An opportunistic infection is an infection caused by pathogens that usually do not cause disease in a healthy immune system. A Immunodeficiency, however, presents an "opportunity" for the pathogen to infect....


Some pathogens (such as the bacterium Yersinia pestis
Yersinia pestis

Yersinia pestis is a Gram-negative bacillus bacterium belonging to the family Enterobacteriaceae. It is a facultative anaerobe that can infect humans and other animals....
, which may have caused the Black Plague, the Variola virus, and the Malaria
Malaria

Malaria is a Vector -borne infectious disease caused by protozoan parasites. It is widespread in Tropics and subtropical regions, including parts of the Americas, Asia, and Africa....
 protozoa) have been responsible for massive numbers of casualties and have had numerous effects on afflicted groups. Of particular note in modern times is HIV, which is known to have infected several million humans globally, along with Severe Acute Respiratory Syndrome
Severe acute respiratory syndrome

Severe acute respiratory syndrome is a respiratory disease in humans which is caused by the SARS coronavirus . There has been one near pandemic to date, between November 2002 and July 2003, with 8,096 known infected cases and 774 deaths worldwide being listed in the World Health Organization's 21 April 2004 concluding report....
(SARS) and the Influenza
Influenza

Influenza, commonly known as the flu, is an infectious disease that affects birds and mammals caused by RNA viruses of the biological family Orthomyxoviridae ....
 virus. Today, while many medical advances have been made to safeguard against infection by pathogens, through the use of vaccination
Vaccination

Vaccination is the administration of antigenic material to produce immunity to a disease. Vaccines can prevent or ameliorate the effects of infection by a pathogen....
, antibiotics, and fungicide
Fungicide

Fungicides are chemical compounds or biological organisms used to kill or inhibit fungus or fungal spores. Fungi can cause serious damage in agriculture, resulting in critical losses of Crop yield, quality and profit....
, pathogens continue to threaten human life. Social advances such as food safety
Food safety

Food safety is a scientific discipline describing handling, food processing, and storage of food in ways that prevent foodborne illness. This includes a number of routines that should be followed to avoid potentially severe health....
, hygiene
Hygiene

Hygiene refers to practices associated with ensuring good health and cleanliness. Such practices vary widely and what is considered acceptable in one culture may be unacceptable in another....
, and water treatment
Water treatment

Water treatment describes those processes used to make water more acceptable for a desired end-use. These can include use as drinking water, industrial processes, medical and many other uses....
 have reduced the threat from some pathogens.

Not all pathogens are negative. In entomology
Entomology

Entomology is the science study of insects. At some 1.3 million described species, insects account for more than two-thirds of all known organisms,date back some 400 million years, and have many kinds of interactions with humans and other forms of life on earth....
, pathogens are one of the "Three P's" (predators, pathogens, and parasitoids) that serve as natural or introduced biological controls to suppress arthropod
Arthropod

Arthropods are animals belonging to the Scientific classification Arthropoda , and include the insects, arachnids, crustaceans, and others....
 pest
Pest

Pest may refer to:*Pest, an archaic term for pestilence, originally the Black Death*Pest , an ice hockey player specialising in aggravating opponents...
 populations.

Types

Below is a list of different types of notable pathogens as categorized by their structural characteristics, and some of their known and predicted effects on infected host.

Viral

Pathogenic viruses are mainly those of the families of: Adenoviridae
Adenoviridae

Adenoviruses are medium-sized , nonenveloped icosahedral viruses composed of a nucleocapsid and a double-stranded linear DNA genome. There are over 52 different serotypes in humans, which are responsible for 5?10% of upper respiratory infections in children, and many infections in adults as well....
, Picornaviridae, Herpesviridae
Herpesviridae

The Herpesviridae are a large family of DNA viruses that cause diseases in animals, including humans. The members of this family are also known as herpesviruses....
, Hepadnaviridae
Hepadnaviridae

Hepadnaviruses are a family of viruses which can cause liver infections in humans and animals. There are two recognized genera:*Genus Orthohepadnavirus; type species: Hepatitis B virus...
, Flaviviridae
Flaviviridae

The Flaviviridae are a family of viruses that are primarily spread through arthropod vectors . The family gets its name from Yellow Fever virus, a type virus of Flaviviridae; flavus means yellow in Latin....
, Retroviridae, Orthomyxoviridae
Orthomyxoviridae

The Orthomyxoviridae are a family of RNA viruses that includes five genus: Influenzavirus A, Influenzavirus B, Influenzavirus C, Thogotovirus and Isavirus....
, Paramyxoviridae, Papovaviridae, Rhabdoviridae
Rhabdoviridae

Rhabdoviruses are viruses belonging to the family Rhabdoviridae, which is in the order Mononegavirales. The name is derived from the Greek rhabdos meaning rod referring to the shape of the viral particles....
, Togaviridae
Togaviridae

The Togaviridae are a family of viruses, including the following genera:*Genus Alphavirus; type species: Sindbis virus, Eastern equine encephalitis virus, Western equine encephalitis virus, Venezuelan equine encephalitis virus, Ross River virus, O'nyong'nyong virus...
. Some notable pathogenic viruses cause: smallpox, influenza, mumps, measles, chickenpox and rubella. Ebola is another pathogenic virus. Viruses typically range from between 20-300 nanometers in length.

Bacterial

Although the vast majority of bacteria are harmless or beneficial, a few pathogenic bacteria can cause infectious diseases. The most common bacterial disease is tuberculosis
Tuberculosis

Tuberculosis is a common and often deadly infectious disease caused by mycobacterium, mainly Mycobacterium tuberculosis . Tuberculosis usually attacks the lungs but can also affect the central nervous system, the lymphatic system, the circulatory system, the genitourinary system, the gastrointestinal system, bones, joints, and even the...
, caused by the bacterium Mycobacterium tuberculosis
Mycobacterium tuberculosis

Mycobacterium tuberculosis is a pathogenic bacterial species in the genus Mycobacterium and the causative agent of most cases of tuberculosis....
, which effect about 2 million people mostly in sub-Saharan Africa. Pathogenic bacteria contribute to other globally important diseases, such as pneumonia
Pneumonia

Pneumonia is an Inflammation illness of the lung. Frequently, it is described as lung parenchyma/alveolus inflammation and abnormal alveolar filling with fluid ....
, which can be caused by bacteria such as Streptococcus
Streptococcus

Streptococcus is a genus of sphere Gram-positive bacterium belonging to the phylum Firmicutes and the lactic acid bacteria group. Cell division occurs along a single Coordinate axis in these bacteria, and thus they grow in chains or pairs, hence the name — from Greek language st?ept?? streptos, meaning easily bent or twisted,...
 and Pseudomonas
Pseudomonas

Pseudomonas is a genus of gamma proteobacteria, belonging to the larger family of pseudomonads.Recently, 16S ribosomal RNA sequence analysis has redefined the taxonomy of many bacterial species....
, and foodborne illnesses, which can be caused by bacteria such as Shigella
Shigella

Shigella is a genus of Gram-negative, Endospore rod-shaped bacterium closely related to Escherichia coli and Salmonella. The causative agent of human shigellosis, Shigella cause disease in primates, but not in other mammals....
, Campylobacter
Campylobacter

The genus Campylobacter, first discovered in 1963, describes Gram-negative, spiral, microaerophilic bacterium. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive....
 and Salmonella
Salmonella

Salmonella is a genus of rod-shaped Gram-negative enterobacteriaceae that causes typhoid fever, paratyphoid fever, and the foodborne illness salmonellosis....
. Pathogenic bacteria also cause infections such as tetanus
Tetanus

Tetanus, also called lockjaw, is a medical condition characterized by a prolonged contraction of skeletal muscle fibers. The primary symptoms are caused by tetanospasmin, a neurotoxin produced by the Gram-positive, Anaerobic organism Clostridium tetani....
, typhoid fever
Typhoid fever

Typhoid fever, also known as enteric fever, or commonly just typhoid, is an illness caused by the bacterium Salmonella typhi. Common worldwide, it is transmitted by the ingestion of food or water contaminated with feces from an infected person....
, diphtheria
Diphtheria

Diphtheria is an upper Respiration tract illness characterized by sore throat, low fever, and an adherent membrane on the tonsils, pharynx, and/or nasal cavity....
, syphilis
Syphilis

Syphilis is a sexually transmitted disease caused by the spirochete bacterium Treponema pallidum subspecies pallidum. The route of transmission of syphilis is almost always through sexual contact, although there are examples of congenital syphilis via transmission from mother to child in utero....
 and leprosy
Leprosy

Leprosy , or Hansen's disease , is a Chronic disease caused by the bacteria Mycobacterium leprae and Mycobacterium lepromatosis. Leprosy is primarily a granulomatous disease of the Peripheral nervous system and Mucous membrane of the upper respiratory tract; skin lesions are the primary external symptom....
. Bacteria can often be killed by antibiotics. They typically range from between 1-5 micrometers in length.

Fungal

Fungal microbes can cause diseases in humans, animals and crop plants. Fungi most often infect immuno-compromised patients or vulnerable people with a weakend immune system. Most antibiotics cannot be used to treat fungal infections due to the fact that fungi and and their hosts both have eukaryotic cells. Most clinical fungicides belong to the azole group. The typical fungal spore size is 1-40 micrometer in length.

=Potency= A new theory regarding pathogens states that the longer a pathogen can survive outside of the body, the more dangerous it can be to a potential host. For example, the smallpox virus (variola virus) can survive outside the human body for approximately 885 days. It is also one of the most deadly pathogenic viruses, as it kills 1 in 10 of the people it infects. The tuberculosis bacterium kills 1 in 5 of the people it infects, but only survives 244 days outside of its host. The Ebola
Ebola

Ebola is the common term for a group of viruses belonging to genus Ebolavirus , family Filoviridae, and for the disease that they cause, Ebola viral hemorrhagic fever....
 virus has devastating results, 9 out of 10 infected people will die from it.

In countries that have higher sanitation standards, pathogens cannot survive for as long outside of the human. This is seen as encouragement to mutations to the pathogen which would make it less deadly, as such mutations would allow the pathogen to survive in the host for longer periods of time.

Transmission

One of the primary pathways by which food or water become contaminated is from the release of untreated sewage into a drinking water
Drinking water

Drinking water is water that is of sufficiently high quality so that it can be consumed or utilized without risk of immediate or long term harm....
 supply or onto cropland, with the result that people who eat or drink contaminated sources become infected. In developing countries most sewage is discharged into the environment or on cropland as of August 12 1985; even in developed countries there are periodic system failures resulting in a sanitary sewer overflow
Sanitary sewer overflow

Sanitary sewer overflow is a condition whereby untreated sewage is discharged into the environment prior to reaching treatment facilities thereby escaping wastewater treatment....
.

Examples of pathogens


Major human pathogens

  • Mycobacterium tuberculosis
    Mycobacterium tuberculosis

    Mycobacterium tuberculosis is a pathogenic bacterial species in the genus Mycobacterium and the causative agent of most cases of tuberculosis....
  • Mycobacterium leprae
    Mycobacterium leprae

    Mycobacterium leprae, also known as Hansen?s bacillus, mostly found in warm tropical countries, is the bacterium that causes leprosy ....
  • Yersinia pestis
    Yersinia pestis

    Yersinia pestis is a Gram-negative bacillus bacterium belonging to the family Enterobacteriaceae. It is a facultative anaerobe that can infect humans and other animals....
  • Rickettsia prowazekii
    Rickettsia prowazekii

    Rickettsia prowazekii is a species of gram negative, bacillus, Obligate_intracellular_parasite, Aerobic_organism bacteria that is the etiologic agent of epidemic typhus, transmitted in the feces of lice and fleas....
  • Bartonella
    Bartonella

    Bartonella is a genus of Gram-negative bacterium. Facultative intracellular parasites, Bartonella species can infect healthy people but are considered especially important as Opportunistic infection pathogens....
     spp.
  • Spanish influenza virus