Oryza sativa
Encyclopedia
Oryza sativa, commonly known
Common name
A common name of a taxon or organism is a name in general use within a community; it is often contrasted with the scientific name for the same organism...

 as Asian rice, is the plant species most commonly referred to in English as rice
Rice
Rice is the seed of the monocot plants Oryza sativa or Oryza glaberrima . As a cereal grain, it is the most important staple food for a large part of the world's human population, especially in East Asia, Southeast Asia, South Asia, the Middle East, and the West Indies...

. Oryza sativa is the cereal
Cereal
Cereals are grasses cultivated for the edible components of their grain , composed of the endosperm, germ, and bran...

 with the smallest genome
Genome
In modern molecular biology and genetics, the genome is the entirety of an organism's hereditary information. It is encoded either in DNA or, for many types of virus, in RNA. The genome includes both the genes and the non-coding sequences of the DNA/RNA....

, consisting of just 430Mb across 12 chromosomes. It is renowned for being easy to genetically modify, and is a model organism for cereal biology.

Classification

Oryza sativa contains two major subspecies: the sticky, short grained japonica or sinica variety, and the non-sticky, long-grained indica variety. Japonica are usually cultivated in dry fields, in temperate East Asia, upland areas of Southeast Asia and high elevations in South Asia, while indica are mainly lowland rices, grown mostly submerged, throughout tropical Asia. Rice is known to come in a variety of colors, including: white, brown, black, purple, and red.

A third subspecies, which is broad-grained and thrives under tropical conditions, was identified based on morphology and initially called javanica, but is now known as tropical japonica. Examples of this variety include the medium grain 'Tinawon' and 'Unoy' cultivars, which are grown in the high-elevation rice terraces of the Cordillera Mountains
Cordillera Mountains
*Andes in South-America *Cordillera Central in the Philippines...

 of northern Luzon
Luzon
Luzon is the largest island in the Philippines. It is located in the northernmost region of the archipelago, and is also the name for one of the three primary island groups in the country centered on the Island of Luzon...

, Philippines.

Glaszmann (1987) used isozyme
Isozyme
Isozymes are enzymes that differ in amino acid sequence but catalyze the same chemical reaction. These enzymes usually display different kinetic parameters Isozymes (also known as isoenzymes) are enzymes that differ in amino acid sequence but catalyze the same chemical reaction. These enzymes...

s to sort Oryza sativa into six groups: japonica, aromatic, indica, aus, rayada, and ashina.

Garris et al. (2004) used SSRs to sort Oryza sativa into five groups; temperate japonica, tropical japonica and aromatic comprise the japonica varieties, while indica and aus comprise the indica varieties.

Nomenclature and taxonomy

List of the cultivars

  • Indica (long grain)
  • Japonica (short grain)

Origins

There have been plenty of debates on the origins of the domesticated rice. However, in 2011, a combined effort by Stanford University
Stanford University
The Leland Stanford Junior University, commonly referred to as Stanford University or Stanford, is a private research university on an campus located near Palo Alto, California. It is situated in the northwestern Santa Clara Valley on the San Francisco Peninsula, approximately northwest of San...

, New York University
New York University
New York University is a private, nonsectarian research university based in New York City. NYU's main campus is situated in the Greenwich Village section of Manhattan...

, Washington University, and Purdue University
Purdue University
Purdue University, located in West Lafayette, Indiana, U.S., is the flagship university of the six-campus Purdue University system. Purdue was founded on May 6, 1869, as a land-grant university when the Indiana General Assembly, taking advantage of the Morrill Act, accepted a donation of land and...

 has provided conclusive evidence that domesticated rice has a single origin in the Yangtze Valley of China
China
Chinese civilization may refer to:* China for more general discussion of the country.* Chinese culture* Greater China, the transnational community of ethnic Chinese.* History of China* Sinosphere, the area historically affected by Chinese culture...

.

The precise date of the first domestication is unknown, but depending on the molecular clock estimate used by the scientists, the date is estimated to be 8,200 to 13,500 years ago. This is consistent with known archaeological data on the subject.

Earlier debates

Based on one chloroplast
Chloroplast
Chloroplasts are organelles found in plant cells and other eukaryotic organisms that conduct photosynthesis. Chloroplasts capture light energy to conserve free energy in the form of ATP and reduce NADP to NADPH through a complex set of processes called photosynthesis.Chloroplasts are green...

 and two nuclear gene
Nuclear gene
A Nuclear gene is a gene located in the cell nucleus of a eukaryote. The term is used to distinguish nuclear genes from the genes in the mitochondrion, and in case of plants, also the chloroplast, which host their own genetic system and can produce proteins from scratch...

 regions, Londo et al. (2006) concluded Oryza sativa rice was domesticated at least twice—indica in eastern India
India
India , officially the Republic of India , is a country in South Asia. It is the seventh-largest country by geographical area, the second-most populous country with over 1.2 billion people, and the most populous democracy in the world...

, Myanmar
Myanmar
Burma , officially the Republic of the Union of Myanmar , is a country in Southeast Asia. Burma is bordered by China on the northeast, Laos on the east, Thailand on the southeast, Bangladesh on the west, India on the northwest, the Bay of Bengal to the southwest, and the Andaman Sea on the south....

 and Thailand
Thailand
Thailand , officially the Kingdom of Thailand , formerly known as Siam , is a country located at the centre of the Indochina peninsula and Southeast Asia. It is bordered to the north by Burma and Laos, to the east by Laos and Cambodia, to the south by the Gulf of Thailand and Malaysia, and to the...

; and japonica in southern China
China
Chinese civilization may refer to:* China for more general discussion of the country.* Chinese culture* Greater China, the transnational community of ethnic Chinese.* History of China* Sinosphere, the area historically affected by Chinese culture...

 and Vietnam
Vietnam
Vietnam – sometimes spelled Viet Nam , officially the Socialist Republic of Vietnam – is the easternmost country on the Indochina Peninsula in Southeast Asia. It is bordered by China to the north, Laos to the northwest, Cambodia to the southwest, and the South China Sea –...

—though they concede that there is archaeological and genetic evidence for a single domestication of rice in the lowlands of China. (See "Origins" section directly above for the latest updates)

Because the functional allele
Allele
An allele is one of two or more forms of a gene or a genetic locus . "Allel" is an abbreviation of allelomorph. Sometimes, different alleles can result in different observable phenotypic traits, such as different pigmentation...

 for nonshattering, the critical indicator of domestication in grains, as well as five other single nucleotide polymorphism
Single nucleotide polymorphism
A single-nucleotide polymorphism is a DNA sequence variation occurring when a single nucleotide — A, T, C or G — in the genome differs between members of a biological species or paired chromosomes in an individual...

s, is identical in both indica and japonica, Vaughan et al. (2008) determined there was a single domestication event for Oryza sativa in the region of the Yangtze river valley.

Continental East Asia

Rice appears to have been used by the early Neolithic
Neolithic
The Neolithic Age, Era, or Period, or New Stone Age, was a period in the development of human technology, beginning about 9500 BC in some parts of the Middle East, and later in other parts of the world. It is traditionally considered as the last part of the Stone Age...

 populations of Lijiacun and Yunchanyan. Evidence of possible rice cultivation in China
China
Chinese civilization may refer to:* China for more general discussion of the country.* Chinese culture* Greater China, the transnational community of ethnic Chinese.* History of China* Sinosphere, the area historically affected by Chinese culture...

 from c. 11,500 BP
Before Present
Before Present years is a time scale used in archaeology, geology, and other scientific disciplines to specify when events in the past occurred. Because the "present" time changes, standard practice is to use AD 1950 as the origin of the age scale, reflecting the fact that radiocarbon...

 has been found, however it is still questioned whether the rice was indeed being cultivated, or instead being gathered
Hunter-gatherer
A hunter-gatherer or forage society is one in which most or all food is obtained from wild plants and animals, in contrast to agricultural societies which rely mainly on domesticated species. Hunting and gathering was the ancestral subsistence mode of Homo, and all modern humans were...

 as wild rice. Bruce Smith, an archaeologist at the Smithsonian Institution
Smithsonian Institution
The Smithsonian Institution is an educational and research institute and associated museum complex, administered and funded by the government of the United States and by funds from its endowment, contributions, and profits from its retail operations, concessions, licensing activities, and magazines...

 in Washington, D.C., who has written on the origins of agriculture
Agriculture
Agriculture is the cultivation of animals, plants, fungi and other life forms for food, fiber, and other products used to sustain life. Agriculture was the key implement in the rise of sedentary human civilization, whereby farming of domesticated species created food surpluses that nurtured the...

, says that evidence has been mounting that the Yangtze was probably the site of the earliest rice cultivation.

Zhao (1998) argues that collection of wild rice in the Late Pleistocene
Late Pleistocene
The Late Pleistocene is a stage of the Pleistocene Epoch. The beginning of the stage is defined by the base of the Eemian interglacial phase before the final glacial episode of the Pleistocene 126,000 ± 5,000 years ago. The end of the stage is defined exactly at 10,000 Carbon-14 years BP...

 had, by 6400 BC, led to the use of primarily domesticated rice. Morphological studies of rice phytolith
Phytolith
Some plants can take up silica in the soil, whereupon it is deposited within different intracellular and extracellular structures of the plant. After these plants decay, silica is redeposited in the soil in the form of phytoliths , which are rigid, microscopic structures of varying sizes and shapes...

s from the Diaotonghuan archaeological site clearly show the transition from the collection of wild rice to the cultivation of domesticated rice. The large number of wild rice phytoliths at the Diaotonghuan level dating from 12,000–11,000 BP indicates that wild rice collection was part of the local means of subsistence. Changes in the morphology of Diaotonghuan phytoliths dating from 10,000–8,000 BP show that rice had by this time been domesticated. Analysis of Chinese rice residues from Pengtoushan, which were carbon 14 dated to 8200–7800 BCE, show that rice had been domesticated by this time.

In 1998, Crawford and Shen reported the earliest of 14 AMS or radiocarbon dates on rice from at least nine Early to Middle Neolithic sites is no older than 7000 BC, that rice from the Hemudu and Luojiajiao sites indicates that rice domestication likely began before 5000 BC, but that most sites in China from which rice remains have been recovered are younger than 5000 BC.

South Asia

Wild Oryza rice appeared in the Belan and Ganges valley regions of northern India as early as 4530 BC and 5440 BC, respectively, although many believe it may have appeared earlier. The Encyclopedia Britannica—on the subject of the first certain cultivated rice—holds that:
Denis J. Murphy (2007) further details the spread of cultivated rice from India into Southeast Asia
Southeast Asia
Southeast Asia, South-East Asia, South East Asia or Southeastern Asia is a subregion of Asia, consisting of the countries that are geographically south of China, east of India, west of New Guinea and north of Australia. The region lies on the intersection of geological plates, with heavy seismic...

:
Rice was cultivated in the Indus Valley Civilization
Indus Valley Civilization
The Indus Valley Civilization was a Bronze Age civilization that was located in the northwestern region of the Indian subcontinent, consisting of what is now mainly modern-day Pakistan and northwest India...

. Agricultural activity during the second millennium BC included rice cultivation in the Kashmir
Kashmir
Kashmir is the northwestern region of the Indian subcontinent. Until the mid-19th century, the term Kashmir geographically denoted only the valley between the Great Himalayas and the Pir Panjal mountain range...

 and Harrappan
Harappa
Harappa is an archaeological site in Punjab, northeast Pakistan, about west of Sahiwal. The site takes its name from a modern village located near the former course of the Ravi River. The current village of Harappa is from the ancient site. Although modern Harappa has a train station left from...

 regions. Mixed farming was the basis of Indus valley economy.

Punjab is the largest producer and consumer of rice in India.

Korean peninsula and Japanese archipelago

Mainstream archaeological evidence derived from palaeoethnobotanical investigations indicate dry-land rice was introduced to Korea
Korea
Korea ) is an East Asian geographic region that is currently divided into two separate sovereign states — North Korea and South Korea. Located on the Korean Peninsula, Korea is bordered by the People's Republic of China to the northwest, Russia to the northeast, and is separated from Japan to the...

 and Japan
Japan
Japan is an island nation in East Asia. Located in the Pacific Ocean, it lies to the east of the Sea of Japan, China, North Korea, South Korea and Russia, stretching from the Sea of Okhotsk in the north to the East China Sea and Taiwan in the south...

 some time between 3500 and 1200 BC. The cultivation of rice in Korea and Japan during that time occurred on a small-scale, fields were impermanent plots, and evidence shows that in some cases domesticated and wild grains were planted together. The technological, subsistence, and social impact of rice and grain cultivation is not evident in archaeological data until after 1500 BC. For example, intensive wet-paddy
Paddy field
A paddy field is a flooded parcel of arable land used for growing rice and other semiaquatic crops. Paddy fields are a typical feature of rice farming in east, south and southeast Asia. Paddies can be built into steep hillsides as terraces and adjacent to depressed or steeply sloped features such...

 rice agriculture was introduced into Korea shortly before or during the Middle Mumun Pottery Period
Mumun pottery period
The Mumun pottery period is an archaeological era in Korean prehistory that dates to approximately 1500-300 BC This period is named after the Korean name for undecorated or plain cooking and storage vessels that form a large part of the pottery assemblage over the entire length of the period, but...

 (c. 850–550 BC) and reached Japan by the final Jōmon or initial Yayoi periods c. 300 BC.

In 2003, Korean archaeologists alleged they discovered burnt grains of domesticated rice in Soro-ri, Korea, which dated to 13,000 BC. These predate the oldest grains in China, which were dated to 10,000 BC, and potentially challenge the mainstream explanation that domesticated rice originated in China. The findings were received by academia with strong skepticism, and the results and their publicizing has been cited as being driven by a combination of nationalist and regional interests.

Southeast Asia

Rice is the staple for all classes in contemporary Southeast Asia
Southeast Asia
Southeast Asia, South-East Asia, South East Asia or Southeastern Asia is a subregion of Asia, consisting of the countries that are geographically south of China, east of India, west of New Guinea and north of Australia. The region lies on the intersection of geological plates, with heavy seismic...

, from Myanmar
Myanmar
Burma , officially the Republic of the Union of Myanmar , is a country in Southeast Asia. Burma is bordered by China on the northeast, Laos on the east, Thailand on the southeast, Bangladesh on the west, India on the northwest, the Bay of Bengal to the southwest, and the Andaman Sea on the south....

 to Indonesia
Indonesia
Indonesia , officially the Republic of Indonesia , is a country in Southeast Asia and Oceania. Indonesia is an archipelago comprising approximately 13,000 islands. It has 33 provinces with over 238 million people, and is the world's fourth most populous country. Indonesia is a republic, with an...

. In Indonesia, evidence of wild Oryza rice on the island of Sulawesi
Sulawesi
Sulawesi is one of the four larger Sunda Islands of Indonesia and is situated between Borneo and the Maluku Islands. In Indonesia, only Sumatra, Borneo, and Papua are larger in territory, and only Java and Sumatra have larger Indonesian populations.- Etymology :The Portuguese were the first to...

 dates from 3000 BCE. The evidence for the earliest cultivation, however, comes from eighth-century stone inscriptions from Java
Java
Java is an island of Indonesia. With a population of 135 million , it is the world's most populous island, and one of the most densely populated regions in the world. It is home to 60% of Indonesia's population. The Indonesian capital city, Jakarta, is in west Java...

, which show kings levied taxes in rice. Divisions of labor between men, women, and animals that are still in place in Indonesian rice cultivation, can be seen carved into the ninth-century Prambanan temples
Prambanan
Prambanan is a ninth century Hindu temple compound in Central Java, Indonesia, dedicated to the Trimurti, the expression of God as the Creator , the Sustainer and the Destroyer...

 in Central Java
Central Java
Central Java is a province of Indonesia. The administrative capital is Semarang. It is one of six provinces on the island of Java.This province is the province of high Human Development in Indonesia and its Points Development Index countries is equivalent to Lebanon. The province of Central Java...

. In the 16th century, Europeans visiting the Indonesian islands saw rice as a new prestige food served to the aristocracy during ceremonies and feasts. Rice production in Indonesian history is linked to the development of iron tools and the domestication of water buffalo for cultivation of fields and manure
Manure
Manure is organic matter used as organic fertilizer in agriculture. Manures contribute to the fertility of the soil by adding organic matter and nutrients, such as nitrogen, that are trapped by bacteria in the soil...

 for fertilizer. Once covered in dense forest, much of the Indonesian landscape has been gradually cleared for permanent fields and settlements as rice cultivation developed over the last 1500 years.
In the Philippines
Philippines
The Philippines , officially known as the Republic of the Philippines , is a country in Southeast Asia in the western Pacific Ocean. To its north across the Luzon Strait lies Taiwan. West across the South China Sea sits Vietnam...

, the greatest evidence of rice cultivation since ancient times can be found in the Cordillera Mountain Range
Cordillera Mountains
*Andes in South-America *Cordillera Central in the Philippines...

 of Luzon
Luzon
Luzon is the largest island in the Philippines. It is located in the northernmost region of the archipelago, and is also the name for one of the three primary island groups in the country centered on the Island of Luzon...

 in the provinces of Apayao
Apayao
Apayao is a landlocked province of the Philippines in the Cordillera Administrative Region in Luzon. Its administrative capital is Luna and founding capital Kabugao. It borders Cagayan to the north and east, Abra and Ilocos Norte to the west, and Kalinga to the south...

, Benguet
Benguet
Benguet is a landlocked province of the Philippines in the Cordillera Administrative Region in Luzon. Its capital is La Trinidad and borders, clockwise from the south, Pangasinan, La Union, Ilocos Sur, Mountain Province, Ifugao, and Nueva Vizcaya....

, Mountain Province
Mountain Province
Mountain Province is a landlocked province of the Philippines in the Cordillera Administrative Region in Luzon. Its capital is Bontoc and borders, clockwise from the south, Ifugao, Benguet, Ilocos Sur, Abra, Kalinga, and Isabela.Mountain Province is sometimes incorrectly named Mountain in some...

 and Ifugao
Ifugao
Ifugao is a landlocked province of the Philippines in the Cordillera Administrative Region in Luzon. Covering a total land area of 262,820 hectares, the province of Ifugao is located in a mountainous region characterized by rugged terrain, river valleys, and massive forests...

. The Banaue Rice Terraces
Banaue Rice Terraces
The Banaue Rice Terraces also called Payew, are 2000-year old terraces that were carved into the mountains of Ifugao in the Philippines by ancestors of the indigenous people. The Rice Terraces are commonly referred to by Filipinos as the "Eighth Wonder of the World". It is commonly thought that...

 (Tagalog
Filipino language
This move has drawn much criticism from other regional groups.In 1987, a new constitution introduced many provisions for the language.Article XIV, Section 6, omits any mention of Tagalog as the basis for Filipino, and states that:...

: Hagdan-hagdang Palayan ng Banaue) are 2,000 to 3,000-year-old terraces that were carved into the mountains by ancestors of the Batad indigenous people. It is commonly thought that the terraces were built with minimal equipment, largely by hand. The terraces are located approximately 1,500 meters (5,000 ft) above sea level and cover 10,360 square kilometers (about 4,000 square miles) of mountainside. They are fed by an ancient irrigation system from the rainforests above the terraces. It is said that if the steps are put end to end it would encircle half the globe. The Rice Terraces (a UNESCO World Heritage Site) are commonly referred to by Filipinos as the "Eighth Wonder of the World".

Evidence of wet rice cultivation as early as 2200 BC has been discovered at both Ban Chiang
Ban Chiang
Ban Chiang is an archeological site located in Nong Han district, Udon Thani Province, Thailand. It has been on the UNESCO world heritage list since 1992....

 and Ban Prasat in Thailand
Thailand
Thailand , officially the Kingdom of Thailand , formerly known as Siam , is a country located at the centre of the Indochina peninsula and Southeast Asia. It is bordered to the north by Burma and Laos, to the east by Laos and Cambodia, to the south by the Gulf of Thailand and Malaysia, and to the...

.

By the 19th century, encroaching European expansionism in the area increased rice production in much of Southeast Asia, and Thailand
Thailand
Thailand , officially the Kingdom of Thailand , formerly known as Siam , is a country located at the centre of the Indochina peninsula and Southeast Asia. It is bordered to the north by Burma and Laos, to the east by Laos and Cambodia, to the south by the Gulf of Thailand and Malaysia, and to the...

, then known as Siam. British Burma became the world's largest exporter of rice, from the turn of the 20th century to the 1970s, when neighbouring Thailand exceeded Burma.

See also

  • International Code of Nomenclature for Cultivated Plants
    International Code of Nomenclature for Cultivated Plants
    The International Code of Nomenclature for Cultivated Plants regulates the names of cultigens...

  • Traceability of genetically modified organisms
    Traceability of genetically modified organisms
    The traceability of genetically modified organisms describes a system that ensures the forwarding of the identity of a GMO from its production to its final buyer. Traceability is an essential prerequisite for the co-existence of GM and non-GM foods, and for the freedom of choice for consumers.-Why...

  • Oryza glaberrima
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