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Lithotroph

 

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Lithotroph



 
 
A lithotroph is an organism
Organism

In biology, an organism is any life thing . In at least some form, all organisms are capable of response to stimulus , reproduction, growth and developmental biology, and maintenance of homeostasis as a stable whole....
 that uses an inorganic substrate (usually of mineral origin) to obtain reducing equivalents for use in biosynthesis (e.g., carbon dioxide fixation) or energy
Energy

In physics, energy is a scalar physical quantity that describes the amount of Work_ that can be performed by a force. Energy is an attribute of objects and systems that is subject to a conservation law....
 conservation via aerobic or anaerobic respiration. Known lithotrophs are exclusively microbes or plant
Plant

Plants are Life organisms belonging to the Kingdom Plantae. They include familiar organisms such as trees, herbs, bushes, grasses, vines, ferns, mosses, and green algae....
s; No known macrofauna
Fauna

File:Fauna.pngFauna is all of the animal life of any particular region or time. The corresponding term for plants is flora.Zoology and paleontology use fauna to refer to a typical collection of animals found in a specific time or place, e.g....
 possesses the ability to utilize inorganic compounds as energy sources. Macrofauna and lithotrophs can form symbiotic relationships, in which case the lithotrophs are called "prokaryotic symbionts." An example of this is chemolithotrophic bacteria in deep sea worms or plastids, which are organelles within plant cells that may have evolved from photolithotrophic cyanobacteria-like organisms. Lithotrophs belong to either the domain Bacteria
Bacteria

The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
 or the domain Archaea
Archaea

The Archaea are a group of single-celled microorganisms. A single individual or species from this domain is called an archaeon . Archaea, like bacteria, are prokaryotic....
.






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Encyclopedia


A lithotroph is an organism
Organism

In biology, an organism is any life thing . In at least some form, all organisms are capable of response to stimulus , reproduction, growth and developmental biology, and maintenance of homeostasis as a stable whole....
 that uses an inorganic substrate (usually of mineral origin) to obtain reducing equivalents for use in biosynthesis (e.g., carbon dioxide fixation) or energy
Energy

In physics, energy is a scalar physical quantity that describes the amount of Work_ that can be performed by a force. Energy is an attribute of objects and systems that is subject to a conservation law....
 conservation via aerobic or anaerobic respiration. Known lithotrophs are exclusively microbes or plant
Plant

Plants are Life organisms belonging to the Kingdom Plantae. They include familiar organisms such as trees, herbs, bushes, grasses, vines, ferns, mosses, and green algae....
s; No known macrofauna
Fauna

File:Fauna.pngFauna is all of the animal life of any particular region or time. The corresponding term for plants is flora.Zoology and paleontology use fauna to refer to a typical collection of animals found in a specific time or place, e.g....
 possesses the ability to utilize inorganic compounds as energy sources. Macrofauna and lithotrophs can form symbiotic relationships, in which case the lithotrophs are called "prokaryotic symbionts." An example of this is chemolithotrophic bacteria in deep sea worms or plastids, which are organelles within plant cells that may have evolved from photolithotrophic cyanobacteria-like organisms. Lithotrophs belong to either the domain Bacteria
Bacteria

The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
 or the domain Archaea
Archaea

The Archaea are a group of single-celled microorganisms. A single individual or species from this domain is called an archaeon . Archaea, like bacteria, are prokaryotic....
. The term "Lithotroph" is created from the terms 'lithos' (rock) and 'troph' (consumer), meaning the "eaters of rock." Many lithoautotrophs are extremophiles, but this is not universally so.

The opposite of lithotroph is organotroph
Organotroph

An organotroph is an organism that obtains hydrogen or electrons from organic substrates . Antonym: Lithotroph...
 - an organism which gets its energy from the break up of organic compounds.

Biochemistry


Lithotrophs consume reduced
Redox

Redox describes all chemical reactions in which atoms have their oxidation number changed.This can be either a simple redox process such as the oxidation of carbon to yield carbon dioxide or the reduction of carbon by hydrogen to yield methane , or it can be a complex process such as the oxidation of sugar in the human body through a ser...
 compounds (rich in electron
Electron

The electron is a subatomic particle that carries a negative electric charge. It has elementary particle and is believed to be a point particle....
s). In chemolithotrophs, the compounds - the electron donors - are oxidized in the cell
Cell (biology)

The cell is the structural and functional unit of all known Life organisms. It is the smallest unit of an organism that is classified as living, and is often called the building bricks of life....
, and the electrons are channeled into respiratory chains, ultimately producing ATP
Adenosine triphosphate

This article is about the chemical used by cells as an energy carrier. For other uses, see ATP .Adenosine-5'-triphosphate is a multifunctional nucleotide, and plays an important role in cell biology as a coenzyme that is the "molecule unit of currency" of intracellular energy transfer....
. The electron acceptor can be oxygen
Oxygen

Oxygen no O2 produced; 2) O2 produced, but absorbed in oceans & seabed rock; 3) O2 starts to gas out of the oceans, but is absorbed by land surfaces and formation of ozone layer; 4-5) O2 sinks filled and the gas accumulates]]...
 (in aerobic
Aerobic organism

An aerobic organism or aerobe is an organism that can survive and grow in an oxygenated environment....
 bacteria), but a variety of other electron acceptors, organic
Organic compound

An organic compound is any member of a large class of chemical compounds whose molecules contain carbon. For historical reasons discussed below, a few types of compounds such as carbonates, simple oxides of carbon and cyanides, as well as the allotropes of carbon, are considered Inorganic compound....
 and inorganic, are also used by various species
Species

In biology, a species is one of the basic units of biological classification and a taxonomic rank. A species is often defined as a group of organisms capable of interbreeding and producing fertile offspring....
. Photolithotrophs obtain energy from light and therefore use inorganic electron donors only to fuel biosynthetic reactions (e. g., carbon dioxide fixation in lithoautotrophs).

Here are a few examples of lithotrophic pathways, any of which may use oxygen or sulfur as electron acceptor:

  • Iron bacteria
    Iron bacteria

    In the management of water supply water wells, iron bacteria are bacteria that derive the energy they need to live and multiply by oxidation solutiond iron#Compounds ....
     oxidize ferrous iron (Fe2+) into ferric iron (Fe3+)
  • Nitrifying bacteria
    Nitrifying bacteria

    Nitrifying bacteria are chemotroph bacteria that grow at the expense of inorganic nitrogen compounds. Many species of nitrifying bacteria have complex internal membrane systems that are the location for key enzymes in nitrification: ammonia monooxygenase which oxidizes ammonia to hydroxylamine, and nitrite oxidoreductase, which oxidizes nitr...
     oxidize ammonia
    Ammonia

    Ammonia is a chemical compound with the chemical formula nitrogenhydrogen. It is normally encountered as a gas with a characteristic pungent odor....
     into nitrite
    Nitrite

    The nitrite ion is NO2-. The anion is bent, being isoelectronic with ozone. More generally, a nitrite compound is either a Salt or an ester of nitrous acid....
     or, alternatively, nitrite into nitrate
    Nitrate

    In inorganic chemistry, a nitrate is a salt of nitric acid with an ion composed of one nitrogen and three oxygen atoms . In organic chemistry the esters of nitric acid and various alcohols are called nitrates....
    .
  • Purple sulfur bacteria
    Bacteria

    The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
     and some chemolithotrophs oxidize sulfide
    Sulfide

    The term sulfide refers to several types of chemical compounds containing sulfur in its lowest oxidation number of −2.Formally, "sulfide" is the dianion, S2−, which exists in strongly alkaline aqueous solutions formed from H2S or alkali metal salts such as Li2S, Na2S, and K2...
     into sulfur
    Sulfur

    Sulfur or sulphur is the chemical element that has the atomic number 16. It is denoted with the symbol S. It is an abundant Valence non-metal....
    . Here oxygen is the electron acceptor.
  • Sulfur bacteria use oxidized sulfur compounds to produce sulfide. They also can grow on a number of oxidized or partly oxidized sulfur compounds (e. g., sulfate, thiosulfate, thionates, polysulfides, sulfite). Here, sulfur is the electron acceptor.
  • Hydrogen bacteria oxidize hydrogen
    Hydrogen

    Hydrogen is the chemical element with atomic number 1. It is represented by the chemical symbol H. At standard temperature and pressure, hydrogen is a colorless, odorless, nonmetallic, tasteless, highly combustion and explosive Diatomic molecule gas with the molecular formula H2....
     to water
    Water

    Water is a common chemical substance that is essential for the survival of all known forms of life. In typical usage, water refers only to its liquid form or States of matter, but the substance also has a solid state, ice, and a gaseous state, water vapor or steam....
    .
  • Carboxydotrophic bacteria oxidise carbon monoxide
    Carbon monoxide

    Carbon monoxide, with the chemical formula CO, is a colorless and odorless, tasteless, yet highly toxic gas. Its molecules consist of one carbon atom covalent bond to one oxygen atom....
     to carbon dioxide
    Carbon dioxide

    Carbon dioxide is a chemical compound composed of two oxygen atoms covalent bond to a single carbon atom. It is a gas at standard temperature and pressure and exists in Earth's atmosphere in this state....
    .


In the following examples, compounds other than oxygen is used as electron acceptors:

  • Methanogens are Archaea capable of oxidising hydrogen at the cost of carbon dioxide
    Carbon dioxide

    Carbon dioxide is a chemical compound composed of two oxygen atoms covalent bond to a single carbon atom. It is a gas at standard temperature and pressure and exists in Earth's atmosphere in this state....
     reduction to methane.
  • Thiobacillus denitrificans is one of many known sulfur bacteria oxidizing reduced sulfur compounds with nitrate instead of oxygen.
  • The recently discovered Anammox
    Anammox

    Anammox, an abbreviation for anaerobic ammonium oxidation, is a stage in the nitrogen cycle. In this biological process, nitrite and ammonium are converted directly into dinitrogen gas....
     bacteria oxidise ammonia
    Ammonia

    Ammonia is a chemical compound with the chemical formula nitrogenhydrogen. It is normally encountered as a gas with a characteristic pungent odor....
     with nitrite
    Nitrite

    The nitrite ion is NO2-. The anion is bent, being isoelectronic with ozone. More generally, a nitrite compound is either a Salt or an ester of nitrous acid....
     as electron acceptor to produce nitrogen gas.
  • Phosphite bacteria oxidize phosphite
    Phosphite

    The phosphite ion is a polyatomic ion with a phosphorus central atom where phosphorus has an oxidation state of +3. Its geometry is approximately tetrahedral.The bonding can be described in terms of a number of resonance canonicals, effectively delocalising the negative charges across the three equivalent oxygen atoms.Many phosphite salts, s...
     into phosphate
    Phosphate

    A phosphate, an inorganic chemical, is a Salt of phosphoric acid. Inorganic phosphates are mining to obtain phosphorus for use in agriculture and industry....
    . They use sulfate as electron acceptor, and reduce it into sulfide.


Lithotrophic bacteria cannot use, of course, their inorganic energy source as a carbon
Carbon

Carbon is a chemical element with chemical symbol C and atomic number 6. As a member of group 14 on the periodic table, it is nonmetallic and tetravalence?making four electrons available to form covalent bond chemical bonds....
 source for the synthesis of their cells, because the above-mentioned electron donors contain no carbon. They choose one of two options:

  • Lithoheterotrophs do not have the possibility to fix carbon dioxide
    Carbon dioxide

    Carbon dioxide is a chemical compound composed of two oxygen atoms covalent bond to a single carbon atom. It is a gas at standard temperature and pressure and exists in Earth's atmosphere in this state....
     and must consume additional organic compounds in order to break them apart and use their carbon. Only few bacteria are fully heterolithotrophic.
  • Lithoautotroph
    Lithoautotroph

    A lithoautotroph is a microbe which derives energy from redox compounds of mineral origin. They may also be referred to as chemolithoautotrophs, a type of Lithotroph, reflecting their autotrophic metabolic pathways....
    s
    are able to use carbon dioxide
    Carbon dioxide

    Carbon dioxide is a chemical compound composed of two oxygen atoms covalent bond to a single carbon atom. It is a gas at standard temperature and pressure and exists in Earth's atmosphere in this state....
     from the air
    AIR

    Air is the part of Earth's atmosphere that humans breath and as such Air .Air may also refer to:...
     as carbon source, the same way plant
    Plant

    Plants are Life organisms belonging to the Kingdom Plantae. They include familiar organisms such as trees, herbs, bushes, grasses, vines, ferns, mosses, and green algae....
    s do.
  • Mixotroph
    Mixotroph

    A mixotrophic organism is one that obtains its electrons from an inorganic electron source , but uses organic matter as a carbon source. Some of these organisms are facultative chemolithotrophs or facultative chemoorganotrophs, and are capable of using either metabolism depending on environmental conditions....
    s
    will take up and utilise organic material to complement their carbon dioxide fixation source (mix between autotrophy and heterotrophy). Many lithotrophs are recognised as mixotrophic in regard of their C-metabolism.


In addition to this division, lithotrophs differ in the initial energy source which initiates ATP production:

  • Chemolithotrophs use the above-mentioned inorganic compounds for aerobic or anaerobic respiration. The energy produced by the oxidation of these compounds is enough for ATP production. Some of electrons derived from the inorganic donors also need to be channeled into biosynthesis. Mostly, additional energy has to be invested to transform these reducing equivalents to the forms and redox potentials needed (mostly NADH or NADPH), which occurs by reverse electron transfer reactions.
  • Photolithotrophs use light
    Light

    Light, or visible light, is electromagnetic radiation of a wavelength that is Visible spectrum to the human eye , or up to 380?750 nm. In the broader field of physics, light is sometimes used to refer to electromagnetic radiation of all wavelengths, whether visible or not....
     as energy source. These bacteria are photosynthetic
    Photosynthesis

    File:Seawifs global biosphere.jpgPhotosynthesis is a metabolic pathway that converts carbon dioxide into organic compounds, especially sugars, using the energy from sunlight....
    ; photolithotrophic bacteria are found in the purple bacteria
    Purple bacteria

    Purple bacteria or purple photosynthetic bacteria are proteobacteria that are phototrophic, i.e. capable of producing energy through photosynthesis....
     (e. g., Chromatiaceae
    Chromatiaceae

    The Chromatiaceae are the main family of purple sulfur bacteria. They are distinguished by producing sulfur globules within their cells. These are an intermediate in the oxidization of sulfide, which is ultimately converted into sulfate, and may serve as a reserve....
    ), green bacteria (Chlorobiaceae and Chloroflexaceae) and Cyanobacteria
    Cyanobacteria

    Cyanobacteria, also known as blue-green algae, blue-green bacteria or Cyanophyta, is a phylum of bacteria that obtain their energy through photosynthesis....
    . The electrons obtained from the electron donors (purple and green bacteria oxidize sulfide, sulfur, sulfite, iron or hydrogen; cyanobacteria extract reducing equivalents from water, i. e., oxidise water to oxygen) are not used for ATP production (as long as there is light); they are used in biosynthetic reactions. Some photolithotrophs shift over to chemolithotropic metabolism in the dark.


Geological significance

Lithotrophs participate in many geological processes, such as the weathering of parent material (bedrock) to form soil, as well as biogeochemical cycling of sulfur
Sulfur

Sulfur or sulphur is the chemical element that has the atomic number 16. It is denoted with the symbol S. It is an abundant Valence non-metal....
, nitrogen
Nitrogen

Nitrogen is a chemical element that has the symbol N and atomic number 7 and atomic mass 14.00674?. Elemental nitrogen is a colorless, odorless, tasteless and mostly inert diatomic gas at standard conditions, constituting 78% by volume of Earth's atmosphere....
, and other elements
Chemical element

A chemical element is a type of atom that is distinguished by its atomic number; that is, by the number of protons in its atomic nucleus. The term is also used to refer to a pure chemical Chemical substance composed of atoms with the same number of protons....
. They may be present in the deep terrestrial subsurface (they have been found well over 3 km below the surface of the planet), in soils, and in endolith
Endolith

An endolith is an organism that lives inside Rock , coral, animal shells, or in the Porositys between mineral grains of a rock. Many are extremophiles; living in places previously thought inhospitable to life....
 communities. As they are responsible for the liberation of many crucial nutrients, and participate in the formation of soil, lithotrophs play a crucial role in the maintenance of life on Earth.

Lithotrophic microbial consortia are responsible for the phenomenon known as acid mine drainage
Acid mine drainage

Acid mine drainage , or acid rock drainage , refers to the outflow of acidic water from abandoned metal mining or coal mines. However, other areas where the earth has been disturbed may also contribute acid rock drainage to the environment....
, whereby energy-rich pyrites and other reduced sulfur compounds present in mine tailing heaps and in exposed rock faces is metabolized to form sulfates, thereby forming potentially toxic sulfuric acid. Acid mine drainage drastically alters the acidity and chemistry of groundwater and streams, and may endanger plant and animal populations. Activities similar to acid mine drainage, but on a much lower scale, are also found in natural conditions such as the rocky beds of glaciers, in soil and talus, on stone monuments and buildings and in the deep subsurface.

See also

  • Endolith
    Endolith

    An endolith is an organism that lives inside Rock , coral, animal shells, or in the Porositys between mineral grains of a rock. Many are extremophiles; living in places previously thought inhospitable to life....