Sister Abhaya murder case
Encyclopedia
The Sister Abhaya Case is an investigation into the 1992 death of a Knanaya
Knanaya
The Knanaya also known as Q'nanaya, Q'nai, Kanai, or Thekkumbagar, are endogamous Jews who settled in Kerala, India. Their origins are unclear and are hotly disputed by academic scholars...

 Roman
Roman Catholic Church
The Catholic Church, also known as the Roman Catholic Church, is the world's largest Christian church, with over a billion members. Led by the Pope, it defines its mission as spreading the gospel of Jesus Christ, administering the sacraments and exercising charity...

 Catholic
Catholic
The word catholic comes from the Greek phrase , meaning "on the whole," "according to the whole" or "in general", and is a combination of the Greek words meaning "about" and meaning "whole"...

 nun who was found dead in a water well
Water well
A water well is an excavation or structure created in the ground by digging, driving, boring or drilling to access groundwater in underground aquifers. The well water is drawn by an electric submersible pump, a trash pump, a vertical turbine pump, a handpump or a mechanical pump...

 in St Pius X convent in Kottayam
Kottayam
Kottayam is a city in the Indian state of Kerala, spread over an area of 55.40 km2. It is the administrative capital of the Kottayam district. Kottayam Kottayam (Malayalam: കോട്ടയം) is a city in the Indian state of Kerala, spread over an area of 55.40 km2. It is the administrative...

, India
India
India , officially the Republic of India , is a country in South Asia. It is the seventh-largest country by geographical area, the second-most populous country with over 1.2 billion people, and the most populous democracy in the world...

. She was 19 years old at the time of her death and a member of St. Joseph's Congregation for women under the Knanaya Catholic diocese of Kottayam
Syro-Malabar Catholic Archeparchy of Kottayam
The Syro-Malabar Catholic Archeparchy of Kottayam is a Roman Catholic eparchy in India, under the Syro-Malabar Catholic Church, comprising Syro-Malabar faithful of the Knanaya ethnoreligious group.-History of the Archeparchy:...

, Kerala
Kerala
or Keralam is an Indian state located on the Malabar coast of south-west India. It was created on 1 November 1956 by the States Reorganisation Act by combining various Malayalam speaking regions....

 in India.

Initially, the local police crime branch concluded that the death was a suicide. A petition by the nuns of the congregation led to a new investigation by the Central Bureau of Investigation
Central Bureau of Investigation
The Central Bureau of Investigation is a government agency of India that serves as a criminal investigation body, national security agency and intelligence agency. It was established on 1 April 1963 and evolved from the Special Police Establishment founded in 1941...

 (CBI). Although the CBI concluded that Abhaya was murdered, they requested closure of the case for lack of evidence; however, the request was rejected by the courts. Sixteen years later, on 19 November 2008, two priests and a nun were arrested by the CBI. On 17 July 2009, charges of murder, destruction of evidence, and defamation were filed against the three.

Timeline

  • March 1992 around 4:00 AM: Abhaya gets up from sleep to study for exam. Goes to the kitchen to get water from the fridge.
  • A search at dawn finds her body in the well in the compound.
  • March 1992: FIR is registered as missing person case and later as unnatural death by Kottayam West Police Station
  • March 1992 10 AM: Abhaya's body is taken out of the well by the fire force
    Firefighter
    Firefighters are rescuers extensively trained primarily to put out hazardous fires that threaten civilian populations and property, to rescue people from car incidents, collapsed and burning buildings and other such situations...

     and inquest drawn up
  • March 1992: Post-mortem conducted on the body by Dr Radhakrishnan of Kottayam Medical College
  • March 1992: Action Council convened by Jomon Puthenpurackal
  • April 1992: Crime Branch takes up investigation
  • January 1993: Crime Branch files closure report as death by suicide
  • March 1993: CBI (Varghese P. Thomas) takes up investigation on orders of Central Government (CBI Headquarters) on the request of the State Government
  • April 1993: Material objects in the case received from the RDO court and destroyed by the Crime Branch..
  • 30 December 1993: Varghese P. Thomas, DSP, CBI submits resignation alleging illegal interference in the investigation by V Thiagarajan, SP, CBI, Cochin.
  • 7 April 1995: Dummy experiment conducted. Forensic medical experts (Dr S K Pathak, Dr Mahesh Verma, Dr. S R Singh) conclude that homicide cannot be ruled out.
  • 29 January 1996: CBI SP Ohri submits final report. Suicide or murder cannot be conclusively proved. CJM court rejects report. CBI to continue investigation.
  • 9 July 1999: DySP Surinder Paul submits report. Homicide, but unable to find culprits. Report again rejected by CJM court.
  • November 2007: Fr. Kottoor, Fr. Puthrukayil, Sr Sephi, Sanju P Mathew etc. undergo narco analysis tests in Bangalore.
  • 7 November 2008: High Court orders investigation by Kerala unit of CBI.
  • 19 November 2008: Two priests and a nun arrested in the case by a CBI team led by Nandakumar Nair, DySP, CBI, Cochin.
  • 25 November 2008: V V Augustine, former ASI who registered the FIR and conducted inquest on the dead body, found dead (committed suicide). Suicide note alleges torture by CBI.
  • 2 December 2008: Accused remanded to police custody by CJM.
  • 29 December 2008: Bail application rejected by the CJM Ernakulam. Bail applications before Justice Ms. Hema of High Court. She says arguments of CBI counsel contrary to the facts recorded in the case diary. CBI requests for transfer of case. Rejected by High Court. Controversial editorial by Kerala Kaumudi.
  • 2 January 2009: Justice Ms. Hema of Kerala High Court grants conditional bail to the three accused. Suspects manipulations in Narco CDs. Orders production of originals. CBI moves Single Bench of Justice Basanth saying case paralysed by the orders of Justice Hema. Basanth orders only he can monitor the case. Basanth's orders refuted by Hema the next day. Says all High Court judges are equal. Only a superior bench can change her orders. Controversy among the media, bar and public about the open disagreements among the two judges. Justice Basanth recuses himself from monitoring the case.
  • 14 January 2009: Supervision of the case transferred to a Division Bench of the Kerala High Court. Originals of the Narco CDs placed before the CJM court. Orders verification by CDAC.
  • 20 February 2009: Jomon Puthenpurackal's autobiography titled Abhaya case diary released.
  • 9 March 2009: CDAC returns Narco CDs citing technical inability to verify the CDs. CDIT to verify CDs.
  • 12 March 2009: Bail conditions of all the accused relaxed by high court. High court closes all the proceedings regarding Abhaya case before it. CJM court Ernakulam to continue proceedings. CBI requests CJM court to sanction narco analysis test to be conducted on Abhaya's room-mate Sr. Sherly and two kitchen servants. Court gives sanction. Sanction challenged in High Court.
  • 23 March 2009: Kerala Kaumudi submits unconditional apology. High Court closes contempt case.
  • 20 June 2009: CDIT finding that Narco CDs doctored. Court orders CBI to find out original CDs/tapes.
  • 4 July 2009: CBI questions Dr. Malini and others.
  • July 2009: CBI makes a volte face and submits that the CDs were not doctored. CDIT challenges the CBI findings.
  • 15 July 2009: Justice Hema while relaxing the bail conditions of Fr. Puthrukayil observes that collusion between CBI and Dr. Malini proved by latest events.
  • 17 July 2009: The CBI filed chargesheet in the Court of Chief Judicial Magistrate, Ernakulam against Fathers Thomas Kottoor and Thomas Poothrikkayil and Sister Sephy.
  • 24 July 2009: Abhaya"s father files contempt of court petition against CBI for failure to produce original narco CDs.
  • 30 July 2009: Justice Hema again criticises CBI. Orders production of charge sheet.
  • 3 August 2009: A division bench of high court consisting Balakrishnan Nair and Ravikumar to hear all petitions in Abhaya case. bail conditions of Sr. Stephy relaxed.
  • 5 August 2009: Supreme Court refuses CBI plea to stay the contempt of court proceedings in high court.
  • 7 August 2009: Stung by repeated criticism in high court, CBI replaces counsel Namboodiri with Sreekumar.
  • 12 August 2009: Supreme court stays CJM and High court orders which allowed CBI to conduct narco tests on a nun and two maids who were inmates of Pius IX hostel at the time of Abhay's death.
  • December 2009: Supreme Court rejects Jomon's plea to stay the investigation ordered by high court regarding his financial and other deals.
  • 3 May 2010: The Supreme Court set aside the directive issued by the Kerala High Court accepting the vigilance investigation report on Jomon.

Action council

An Action Council was convened by Jomon Puthenpurackal in 1992 demanding prosecution of those responsible for the murder of Abhaya.

67 nuns belonging to Abhaya's congregation petitioned the Chief Minister of the Kerala State Government to investigate the case as a homicide. On 7 April 1992, the Director General of Police of Kerala directed the Crime Branch of the Kerala Police
Kerala Police
The Kerala State Police is the law enforcement agency for the state of Kerala, India. Kerala Police has its headquarters in Thiruvananthapuram, the state capital. The Police training college was set up by Travancore Maharaja in Thiruvananthapuram in mid 20th centuary. In 2004,a larger Kerala...

 to take over the investigation from the local police. The Kerala Government, on the basis of the petition, recommended a CBI enquiry. On 29 March 1993, CBI began a new investigation.

Kerala Police

On 27 March 1992, Kottayam West Police Station ASI V V Augustine visited the crime scene and called the fire force to search for Abhaya's body in the well in the compound. The fire force took removed the body from the well. An inquest was prepared by ASI Augustine. Photographs of the body were also taken. Clothing of Abhaya was taken into custody. Later these items of physical evidence were destroyed. The post-mortem report indicated death by drowning but also reported on the possibility of homicide based on head injuries.

On 7 April 1992, the Director General of Police
Director General of Police
In India the director general of police or inspector general of police is a three-star rank and the highest ranking police officer in Indian States & Union Territories. All DGPs/IGPs are Indian Police Service officers. The DGP/IGP is usually the head of the state police force in every Indian state...

 of Kerala directed the Crime Branch section of the Kerala police to take up the investigation. The Crime Branch submitted its report before the Revenue Divisional Officer (RDO) on 30 January 1993. The Crime Branch concluded that Abhaya had committed suicide. According to the post mortem report, she had died from drowning. Though there were allegations that the Crime Branch had procured the evidence in the case from the court and destroyed it, this was subsequently disproved by the CBI.

CBI

On 29 March 1993, the First Information Report
First Information Report
A First Information Report or FIR is a written document prepared by the police in India, Pakistan and Japan when they receive information about the commission of a cognizable offence. It is a report of information that reaches the police first in point of time and that is why it is called the First...

 (FIR) in the case was registered by the Central Bureau of Investigation
Central Bureau of Investigation
The Central Bureau of Investigation is a government agency of India that serves as a criminal investigation body, national security agency and intelligence agency. It was established on 1 April 1963 and evolved from the Special Police Establishment founded in 1941...

 (CBI). The CBI started investigating the death of Sister Abhaya under the direct supervision of its officer Varghese P. Thomas.

On 29 November 1996, the CBI issued the first final report. The author of the report, A.K. Ohri, stated that he could not determine whether Abhaya's death was suicide or homicide. The report was not accepted by the Chief Judicial Magistrate's Court. On 9 July 1999, the CBI issued a second final report authored by Surinder Paul. Paul concluded that Abahya's death was a homicide, but he could not establish the identity of the perpetrators. Paul's report was also not accepted by the court. On 25 August 2005, the CBI issued yet another report, authored by R.R. Sahay. Sahay concluded that there was no indication that anyone was involved in Abahya's death. The report was again not accepted. On 4 September 2008, the court turned the investigation over to the Kerala branch of the CBI.

Some of the initial manipulations in the case by the local police and crime branch, alleged by CBI are:

-The inquest report did not indicate the homicidal injuries on the body of Abhaya.

-The material evidence in the case was destroyed and the clothes were not subject to forensic examination

-The photographs showing injuries on the body were removed.

-
The crime scene was tampered with or material physical evidence was not collected from the crime scene.

During the initial inquiry, the post-mortem, chemical examination and laboratory
Laboratory
A laboratory is a facility that provides controlled conditions in which scientific research, experiments, and measurement may be performed. The title of laboratory is also used for certain other facilities where the processes or equipment used are similar to those in scientific laboratories...

 report also had been erased and then rewritten due to other influence.

On 30 December 1993, Varghese P. Thomas resigned from the service of CBI and from the investigation of Abhaya's death. He had seven more years in service to retire. He had arrived at the conclusion that Abhaya's death was a case of murder and he had recorded it as such in the Case Diary. Subsequently on 19 January 1994, he called a special press conference in Cochin and announced that he had resigned from CBI as his conscience did not permit him to comply with a strong directive given by his superior officer, V. Thyagarajan, the then Superintendent of CBI Cochin Unit, who had asked Varghese P. Thomas to record the death of Abhaya as suicide in the Case Diary. With this press conference, the case of Sr. Abhaya caught media attention all over India
India
India , officially the Republic of India , is a country in South Asia. It is the seventh-largest country by geographical area, the second-most populous country with over 1.2 billion people, and the most populous democracy in the world...

 and the matter was strongly debated in the parliament
Parliament of India
The Parliament of India is the supreme legislative body in India. Founded in 1919, the Parliament alone possesses legislative supremacy and thereby ultimate power over all political bodies in India. The Parliament of India comprises the President and the two Houses, Lok Sabha and Rajya Sabha...

 as well as in the Kerala state assembly on several occasions.

Writ Petition to Kerala High Court

The Action Council filed another Writ petition in the Kerala High Court
Kerala High Court
High Court of Kerala is the highest court in the Indian state of Kerala and in the Union Territory of Lakshadweep. The High Court of Kerala is headquartered at Kochi...

 asking the court to remove V. Thyagarajan from Cochin Unit of the CBI as well as from the investigation. Further on 3 June 1994 all the MP
Member of Parliament
A Member of Parliament is a representative of the voters to a :parliament. In many countries with bicameral parliaments, the term applies specifically to members of the lower house, as upper houses often have a different title, such as senate, and thus also have different titles for its members,...

's from Kerala State jointly submitted a passionate petition to K. Vijaya Rama Rao, the Director of the CBI requesting him to disallow Thyagarajan to continue in the Abhaya's murder case. As a result M.L. Sharma, the Joint Director of the CBI, was given charge of the investigation into Abhaya's death.

Cause of death

Dr C Radhakrishnan, the forensic surgeon and former Principal of Kottayam Medical College, who conducted the post-mortem on the body of the deceased Abhaya, had given the report as death by drowning. He later made a statement before the Magistrate on 1 January 2009. The crime branch did not allow him to visit the crime scene to form a definite opinion as to the cause of death. The explanation of the crime branch is that the case had been handed over to the state forensic chief Dr. Umadathan.
Dr. Radhakrishnan noted six homicidal injuries on the body of the deceased.



Sr. Abhaya had the following ante-mortem injuries as per the post-mortem certificate issued by Dr. Radhakrishnan:

1. Lacerated wound 1.8x0.5x0.2 cm., oblique, on the right side of the back of head, the upper end being 3 cm above end 3 cm behind the top of ear.

2. Lacerated wound 1.5x0.5x0.3 cm, oblique, on the head 2.5 cm behind injury No.1.

3. Graze abrasion 4 x 3 cm., oblique on the right side of the back of trunk, 9 cm below the lower end of shoulder blade with an upward and inward direction.

4. Abrasion 1.5x1 cm., 2 cm below injury No.3.

5. Multiple graze abrasions over an area 12 x 6 cm on the outer aspect of right buttock, the upper boarder being 4 cm below iliac crest. The direction of the grazes were upwards and inwards.

6. On dissection the scale tissues over an area 2 x2 cm on middle of the top of head were found contused. The scalp tissues over an area 7 x 5 cm around injuries Nos.1 and 2 were also found contused.

The skull was intact. Brain showed localised sub-arachnoid haemorrhage underneath these contused regions. No sign of increased intra-cranial tension."

CBI's dummy test

On the 7 April 1995, using a full-sized dummy of Sister Abhaya, the CBI made some experimental tests in the well where her corpse was found. Based on the post mortem report, On 17 April 1995 Dr. S.K. Pathak, the chief of the Forensic Department of Sawai Man Singh Medical college, Jaipur
Jaipur
Jaipur , also popularly known as the Pink City, is the capital and largest city of the Indian state of Rajasthan. Founded on 18 November 1727 by Maharaja Sawai Jai Singh II, the ruler of Amber, the city today has a population of more than 3.1 million....

 and Dr. Mahesh Varma, former chairperson of Anatomy Section submitted their formal expert report
Expert report
An expert report is a study written by one or more experts that states findings and offers opinions.In law, expert reports are generated by expert witnesses offering their opinions on points of controversy in a legal case, and are typically sponsored by one side or the other in a litigation in...

 to the CBI investigation team to the effect that homicide could not be ruled out. Subsequently the CBI declared that the killers would soon be arrested.

Protests

After the dummy test, no arrests were made. The Action Council staged a protest in front of the CBI office at Cochin on 27 November 1995. Later, on 18 March 1996, another big rally was organised under the leadership of former chief minister of the state, E.K. Nayanar, in front of the state secretariat at Thiruvananthapuram
Thiruvananthapuram
Thiruvananthapuram , formerly known as Trivandrum, is the capital of the Indian state of Kerala and the headquarters of the Thiruvananthapuram District. It is located on the west coast of India near the extreme south of the mainland...

, the state capital. Again, on 1 July 1996, the Action Council filed a petition in the High Court challenging the inaction of the CBI. On 20 August 1996, the High Court directed the CBI to complete its investigation in three months. In the meantime, the CBI advertised an award of Rs
Indian rupee
The Indian rupee is the official currency of the Republic of India. The issuance of the currency is controlled by the Reserve Bank of India....

 300,000 to anyone who could give dependable evidence in the case.

On 12 October 1996, all the MPs from Kerala visited the Prime Minister
Prime Minister of India
The Prime Minister of India , as addressed to in the Constitution of India — Prime Minister for the Union, is the chief of government, head of the Council of Ministers and the leader of the majority party in parliament...

 and pleaded with him to expedite the CBI investigation. However, on 6 December 1996 the CBI filed a petition in the Chief Judicial Magistrate's court Ernakulam
Ernakulam
Ernakulam refers to the downtown area or the western part of the mainland of Kochi city in Kerala, India. The city is the most urban part of Kochi and has lent its name to the Ernakulam district. Ernakulam is called the commercial capital of the state of Kerala and is a main nerve of business in...

 seeking to wind up its investigation in the matter for lack of evidence. The court rejected the request and directed the CBI to continue the investigation.

Court criticizing CBI

The Chief Judicial Magistrate
Magistrate
A magistrate is an officer of the state; in modern usage the term usually refers to a judge or prosecutor. This was not always the case; in ancient Rome, a magistratus was one of the highest government officers and possessed both judicial and executive powers. Today, in common law systems, a...

 (CJM) directed the CBI in its order dated 20 March 1997 to re-investigate the case. The court in its order strongly criticized the CBI for its loyalty and complicity to certain vested interests to defeat the ends of justice and the court observed that the CBI had not made party some very significant persons who otherwise emerged in the facts of the case quite evidently. The court also asserted its belief that the case could have easily been established had there been an honest and proper investigation. Further the court after seeing the video cassette of an Asianet interview, mentioned K.T. Michael by name for "influencing" the course of the investigation. This remark was later expunged by the High Court, after considering the reasons for the statements made during the interview. The CJM court observed that certain "invisible hands" were still trying to scuttle the Sister Abhaya murder case observing that these forces were trying to influence the investigating agencies and the government officials.

High Court’s new intervention

The Action Council, again on 30 May 1997 filed a Public Interest Litigation
Public interest litigation
In Indian law, Public Interest Litigation OR जनहित याचिका means litigation for the protection of the public interest. It is litigation introduced in a court of law, not by the aggrieved party but by the court itself or by any other private party...

 in the High Court of Kerala against the non-compliance of the CJM's directive for re-investigation. The High Court in its order directed the CBI to report back to the court the progress it had made in the investigation in ten days from the date of the order.

Having had enough of the failure and lack of interest on the part of the CBI, the High Court directed suo moto
Suo moto
Suo motu, meaning "on its own motion," is a Latin legal term, approximately equivalent to the term sua sponte. For example, it is used where a government agency acts on its own cognizance, as in "the Commission took suo motu control over the matter." Example - "there is no requirement that a court...

 the Director of the CBI to appoint a special team from New Delhi to investigate the matter. Thus P.D. Meena, the Superintendent of the CBI from New Delhi and his team undertook a month-long investigation and reported to the High Court. The CBI was convinced that the death of Abhaya was in fact murder. However, the CBI report said that due to lack of evidence it was not possible to go further into the matter. The High Court again on 28 September 1998 directed the CBI to file its final report of the re-investigation on or before 12 October 1998.

The magistrate court later affirmed that there was clear evidence to show that some officers who took part in the investigation conducted by the local police and Crime Branch wanted to refer this case as a case of suicide. The remarks were later expunged by the High Court.

Developments since 2007

A report by B. Sreejan, senior reporter with the Thiruvananthapuram
Thiruvananthapuram
Thiruvananthapuram , formerly known as Trivandrum, is the capital of the Indian state of Kerala and the headquarters of the Thiruvananthapuram District. It is located on the west coast of India near the extreme south of the mainland...

 bureau of The New Indian Express
The New Indian Express
The New Indian Express is an Indian English-language broadsheet daily newspaper published by the Express Publications. It was founded in 1932 as the Indian Express, under the ownership of Chennai-based P. Varadarajulu Naidu. In 1991, following the death of the then owner Ramnath Goenka, the Goenka...

 (12 April 2007), stated that the original chemical examination report of the vaginal swab and vaginal smear of Abhaya has been found to have been tampered with. The manuscript of the workbook report from the Chemical Examination Laboratory shows over-writing in four places. Using a whitener and a different ink, the word ‘‘not’’ has been added to the word ‘‘detected,’. The lab explained that it was quite normal to make corrections in the manuscript. Even Varghese P Thomas, the first investigating officer, said the post mortem and lab reports had ruled out rape, leaving no scope for suspicions on the veracity of the report.

Narco analysis tests

As part of its investigation in August 2007, the CBI conducted Narco Analysis tests on Fr.Thomas Kottoor, Fr. Jose Poothrikkayil, Sr. Sephy and some others whom they believed had knowledge about the case. Narco Analysis test report and CD were sent to the Chief Judicial Magistrate Court and to the High Court.

There were allegations that the CDs relating to the narco analysis tests were manipulated. Justice Ramkumar of the Kerala High Court sent questionnaires to Dr. Malini, Assistant Director of the Bangalore centre where the narco analysis was conducted. The lab denied any manipulation. But Justice Hema, who heard the bail petition of the accused, based on Case Diaries, mentioned that the narco analysis CDs might have been manipulated and wanted the originals to be produced in court.
Dr. Malathi has since been dismissed from service on the charge of forging her birth certificates.
CDAC Trivandrum, ordered by the Ernakulam CJM court to verify the Narco CDS submits that they are not equipped for the tests. CDs given to CDIT for tests. CDIT submits the finding that the CDs have been doctored more than 30 times. Court orders CBi to find out the original CDs. within 10 days. CBI questions the forensic lab officials including Dr. Malini. CBi makes a volte face and submits that the CDs were not edited. CDIT challenges the submission by CBI. Abhaya's father files contempt of court petition against CBI for not producing original CDs.

2008

On January 11, 2008, the Kerala High Court directed the CBI to produce the result of the Narco-analysis test conducted on the suspects in the case in a sealed cover before the court within two weeks. The court further directed that no third person had any right of disclosure of the content of the results till the appropriate stage, other than the High Court. In this regard, the CBI submitted it before the court on January 21, 2008. The results were submitted in a sealed cover as directed by the court.

Allegations regarding community leaders trying to sabotage the case

Since the incident happens to involve religion and sensitive elements it always created controversy. There were wide speculations that an influential Christian political leader from Central Kerala tried to sabotage the case by influencing the then Congress government in the centre. Other allegations include the Catholic Church Council trying to influence the outcome of the investigations. Others also allege that due to the constant pressure that the action council and their convener and his secret financial backers that a lot of real good leads were never followed up on or investigated.

Arrests

CBI
Central Bureau of Investigation
The Central Bureau of Investigation is a government agency of India that serves as a criminal investigation body, national security agency and intelligence agency. It was established on 1 April 1963 and evolved from the Special Police Establishment founded in 1941...

 arrested two Knanaya Catholic priests, Thomas Kottur (spelled Kottoor in another publication) and Jose Puthurukkayil, and a Knanaya nun, Sister Sephy, on 19 November 2008.

On November 22, 2008 Archbishop Kuriakose Kunnacherry
Kuriakose Kunnacherry
Kuriakose Kunnacherry , a Syro-Malabar bishop, was born in Kaduthuruthy, India.Ordained in 1955, he became Coadjutor Bishop of Kottayam in 1967. That same year he was appointed Titular Bishop of Cephas....

, former head of the Archdiocese of Kottayam, was summoned for questioning. The CBI questioned Kottayam Archbishop Mathew Moolekkatt
Mathew Moolakkattu
Mathew Moolakkattu was born in Uzhavoor, India. Currently he is Archbishop of Kottayam, succeeding Kuriakose Kunnacherry upon his retirement, he is a member of the Order of St. Benedict.-External links:* at Catholic-Hierarchy...

 at its office in Kochi on November 24, 2008.

On November 25, 2008 V.V. Augustine, the Assistant Sub Inspector who prepared the First Information Report
First Information Report
A First Information Report or FIR is a written document prepared by the police in India, Pakistan and Japan when they receive information about the commission of a cognizable offence. It is a report of information that reaches the police first in point of time and that is why it is called the First...

 during the initial case investigation, was found dead. Police said he committed suicide by cutting the artery on his wrist and taking poison. A suicide note cited mental torture by the CBI. The CBI had alleged that Augustine had destroyed evidence and closed the case as a suicide, but the case diary revealed it was Augustine who pointed to the possibility of homicide. He had recorded that Abhaya could have seen something objectionable in the dining room and could have been silenced. In his personal diary, Augustine wrote about how he was pressured by CBI to say that senior police officers tried to influence him.

On 02 and 29 December 29, 2008, the CBI made a statement before P. D. Soman, Chief Judicial Magistrate Ernakulam. According to the CBI, their brain-mapping and narco analysis investigations revealed that Abhaya woke up on 27 March 1992, early in the morning, descended the staircase and went to the hostel kitchen to get a drink of water from the refrigerator. Sephy hit Abhaya with an axe
Axe
The axe, or ax, is an implement that has been used for millennia to shape, split and cut wood; to harvest timber; as a weapon; and as a ceremonial or heraldic symbol...

 ('kodali') thrice on the back of the head. She then collapsed. Thinking that Abhaya was dead, Kottoor and Poothrikkayil, assisted by Sephy, lifted Abhaya's body, took it out of the kitchen and dumped it in a well behind the building.

On 1 January 2009, Justice Hema of the Kerala High Court granted conditional bail to the three accused. She stated that the arguments of the CBI counsel were not based on the facts as recorded in the case diary.

Motives

The CBI informed the Kerala High Court in late November 2008 and early December 2008 that Sister Abhaya had accidentally intruded upon Sr. Sephy and the other two accused priests in a "compromising position". Sr Sephy panicked and, on the spur of the moment, Sephy hit Abhaya with an axe meant for chopping firewood. The three accused together dumped Abhaya's body into the well.

CBI also informed the High Court about the remarkable degree of care the accused took to hide the crime. This allegedly included the bizarre claim of a hymen-restoration (hymenoplasty or hymenorrhaphy
Hymenorrhaphy
Hymenorrhaphy or hymenoplasty or hymen reconstruction surgery is the surgical restoration of the hymen. The term comes from the Greek words hymen meaning membrane, and raphe meaning suture...

) procedure on Sr. Sephy which was discovered through gynecological tests conducted on her in late 2008. This was strongly refuted by the accused. The counsel for the accused dared CBI to prove that such an operation has ever been conducted in India. Further, the building where the crime was allegedly committed was extensively remodeled.

Bail granted

On 1 January 2009, Kerala High Court
Kerala High Court
High Court of Kerala is the highest court in the Indian state of Kerala and in the Union Territory of Lakshadweep. The High Court of Kerala is headquartered at Kochi...

 Justice K. Hema granted conditional bail to Catholic priests Thomas Kootoor and Jose Puthrukakyil and Sister Seffy. The CBI had pleaded with the Chief Justice that the bail application should be moved out of Hema's court as she was "prejudiced towards the case".

Hema found that the arguments of the CBI
CBI
- Places and installations :* Cape Breton Island, part of Nova Scotia, Canada* Center for Biomedical Imaging, a research facility of Boston University Medical Center* Central Bukidnon Institute, a secondary school in the Philippines...

 counsel were based on the stories appearing in the media rather than on the case diary. Counsel responded that the arguments had been accepted by the earlier courts. Based on the case diary, Hema found that the CBI investigation was "only a chase for the shadow rather the object in this case. This chase is only a futile exercise. Investigation means to carefully examine the facts of a situation, an event, a crime, etc., to find out the truth about it or how it happened. It is not to fix the target first, without any evidence and then make a hunt for evidence."

Hema also criticised the media and the public, which pronounced the verdict knowing very little about the facts of the case, including the 24 volumes of case diary, the medical reports and the statements from the doctors. Hema also mentioned the accusations propagated by the media, public and the CBI against officers of the local police and crime branch without any incriminating evidence.

Hema refuted the argument that ASI Augustine tried to suppress facts. The case diary indicates that it was Augustine, who was in charge of the case for only two days, recorded the possibility of murder. Hema also observed that nowhere in the case diary is there any mention that the church had tried to influence the investigation. Hema also made observations on the reliability of the narco analysis CDs and ordered production of the original CDs.

On 18 December 2008, Kerala Kaumudi
Kerala Kaumudi
Kerala Kaumudi is a popular Malayalam newspaper, founded in 1911 by C. V. Kunhiraman with K. Sukumaran B.A. as the founder editor. Printed from Thiruvananthapuram, Kollam, Alappuzha, Kochi, Kozhikode, Kannur in Kerala and Bangalore, Kerala Kaumudi is the third most circulated Malayalam daily. The...

 wrote an editorial criticizing Hema's conduct during the bail hearing. A Division Bench of the High Court initiated criminal contempt of court
Contempt of court
Contempt of court is a court order which, in the context of a court trial or hearing, declares a person or organization to have disobeyed or been disrespectful of the court's authority...

proceedings against the newspaper on the basis of the editorial. Subsequently, Kerala Kaumudi apologized, which the High Court accepted.

CBI filed chargesheet

On 17 July 2009, the CBI filed a chargesheet in the Court of Chief Judicial Magistrate Ernakulam, charging Fathers Kottoor and Poothrikkayil and Sister Sephy with murder, destruction of evidence, and defamation.
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