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Mass Spectrometry

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Mass spectrometry



 
 
Mass spectrometry (MS) is an analytical technique for the determination of the elemental composition of a sample or molecule
Molecule

In chemistry, a molecule is defined as a sufficiently stable, electric charge neutral group of at least two atoms in a definite arrangement held together by very strong chemical bonds....
. It is also used for elucidating the chemical structures of molecules, such as peptide
Peptide

Peptides are short polymers formed from the linking, in a defined order, of a-amino acids. The link between one amino acid residue and the next is known as an amide chemical bond or a peptide bond....
s and other chemical compound
Chemical compound

A chemical compound is a Chemical substance consisting of two or more different chemical element Chemical bond together in a fixed mass ratio that can be split into simpler substances....
s. The MS principle consists of ionizing chemical compounds to generate charged molecules or molecule fragments and measurement of their mass-to-charge ratio
Mass-to-charge ratio

The mass-to-charge ratio, is a physical quantity that is widely used in the electrodynamics of charged particles, e.g. in electron optics and ion optics....
s. In a typical MS procedure, a sample is loaded onto the MS instrument, and its compounds are ionized by different methods (e.g., by impacting them with an electron
Electron

The electron is a subatomic particle that carries a negative electric charge. It has elementary particle and is believed to be a point particle....
 beam), resulting in the formation of charged particles (ion
Ion

An ion is an atom or molecule which has lost or gained one or more electrons, giving it a positive or negative electrical charge. According to the Bohr_model this will be from or in the outer shield 'n'....
s).






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Mass spectrometry (MS) is an analytical technique for the determination of the elemental composition of a sample or molecule
Molecule

In chemistry, a molecule is defined as a sufficiently stable, electric charge neutral group of at least two atoms in a definite arrangement held together by very strong chemical bonds....
. It is also used for elucidating the chemical structures of molecules, such as peptide
Peptide

Peptides are short polymers formed from the linking, in a defined order, of a-amino acids. The link between one amino acid residue and the next is known as an amide chemical bond or a peptide bond....
s and other chemical compound
Chemical compound

A chemical compound is a Chemical substance consisting of two or more different chemical element Chemical bond together in a fixed mass ratio that can be split into simpler substances....
s. The MS principle consists of ionizing chemical compounds to generate charged molecules or molecule fragments and measurement of their mass-to-charge ratio
Mass-to-charge ratio

The mass-to-charge ratio, is a physical quantity that is widely used in the electrodynamics of charged particles, e.g. in electron optics and ion optics....
s. In a typical MS procedure, a sample is loaded onto the MS instrument, and its compounds are ionized by different methods (e.g., by impacting them with an electron
Electron

The electron is a subatomic particle that carries a negative electric charge. It has elementary particle and is believed to be a point particle....
 beam), resulting in the formation of charged particles (ion
Ion

An ion is an atom or molecule which has lost or gained one or more electrons, giving it a positive or negative electrical charge. According to the Bohr_model this will be from or in the outer shield 'n'....
s). The mass-to-charge ratio
Mass-to-charge ratio

The mass-to-charge ratio, is a physical quantity that is widely used in the electrodynamics of charged particles, e.g. in electron optics and ion optics....
 of the particles is then calculated from the motion of the ions as they transit through electromagnetic
Electromagnetism

Electromagnetism is the physics of the electromagnetic field, a field which exerts a force on Elementary particles with the property of electric charge and which is reciprocally affected by the presence and motion of such particles....
 fields.

MS instruments consist of three modules: an ion source
Ion source

An ion source is an electro-magnetic device that is used to create Ion. These are used primarily within Mass spectrometry, particle accelerators, Ion implantation and Ion thruster....
, which splits the sample molecules into ions; a mass analyzer, which sorts the ions by their masses by applying electromagnetic fields; and a detector, which measures the value of an indicator quantity and thus provides data for calculating the abundances of each ion present. The technique has both qualitative
Qualitative

The term qualitative is used to describe certain types of information. Qualitative data are described in terms of quality . This is the converse of quantitative, which more precisely describes data in terms of quantity and often using a numerical figure to represent something in a statement....
 and quantitative
Quantitative

A quantitative attribute is one that exists in a range of magnitudes, and can therefore be measurement. Measurements of any particular quantitative property are expressed as a specific quantity, referred to as a Unit of measurement, multiplied by a number....
 uses. These include identifying unknown compounds, determining the isotopic
Isotope

Isotopes are any of the different types of atoms of the same chemical element, each having a different atomic mass . Isotopes of an element have atomic nucleus with the same number of protons but different numbers of neutron....
 composition of elements in a molecule, and determining the structure
Structure

Structure is a fundamental and sometimes intangible notion covering the recognition, observation, nature , and stability of patterns and relationships of entities....
 of a compound by observing its fragmentation. Other uses include quantifying the amount of a compound in a sample or studying the fundamentals of gas phase ion chemistry
Gas phase ion chemistry

Gas phase ion chemistry is a field of science encompassed within both chemistry and physics. It is the science that studies ions and molecules in the gas phase, most often enabled by some form of mass spectrometry....
 (the chemistry of ions and neutrals in a vacuum). MS is now in very common use in analytical laboratories that study physical, chemical, or biological properties of a great variety of compounds.

Etymology

The word spectrograph has been used since 1884 as an "International Scientific Vocabulary". The linguistic roots
Root (linguistics)

The root is the primary lexicology unit of a word, which carries the most significant aspects of semantics content and cannot be reduced into smaller constituents....
 are a combination and removal of bound morpheme
Bound morpheme

In morphology , a bound morpheme is a morpheme that cannot stand alone as an independent word while carrying the lexical meaning related to the one in the word it is taken from....
s and free morphemes which relate to the terms spectr-um and phot-ograph-ic plate. Early spectrometry devices that measured the mass-to-charge ratio of ions were called mass spectrographs which consisted of instruments that recorded a spectrum
Spectrum

A spectrum is a condition that is not limited to a specific set of values but can vary infinitely within a Continuum . The word saw its first scientific use within the field of optics to describe the rainbow of colors in visible light when separated using a triangular prism ; it has since been applied by analogy to many fields other than op...
 of mass values on a photographic plate
Photographic plate

Photographic plates preceded photographic film as a mean of photography. A light-sensitive emulsion of silver salts was applied to a glass plate....
. A
mass spectroscope is similar to a mass spectrograph except that the beam of ions is directed onto a phosphor
Phosphor

A phosphor is a substance that exhibits the optical phenomenon of phosphorescence .Phosphors are transition metal compounds or rare earth element compounds of various types....
 screen. A mass spectroscope configuration was used in early instruments when it was desired that the effects of adjustments be quickly observed. Once the instrument was properly adjusted, a photographic plate was inserted and exposed. The term mass spectroscope continued to be used even though the direct illumination of a phosphor screen was replaced by indirect measurements with an oscilloscope
Oscilloscope

An oscilloscope is a type of electronic test instrument that allows signal voltages to be viewed, usually as a two-dimensional graph of one or more electrical potential differences plotted as a function of time or of some other voltage ....
. The use of the term
mass spectroscopy is now discouraged due to the possibility of confusion with light spectroscopy
Spectroscopy

Spectroscopy was originally the study of the interaction between radiation and matter as a function of wavelength . In fact, historically, spectroscopy referred to the use of visible light dispersed according to its wavelength, e.g....
. Mass spectrometry is often abbreviated as
mass-spec or simply as MS. Thomson has also noted that a mass spectroscope is similar to a mass spectrograph except that the beam of ions is directed onto a phosphor
Phosphor

A phosphor is a substance that exhibits the optical phenomenon of phosphorescence .Phosphors are transition metal compounds or rare earth element compounds of various types....
 screen. The suffix -scope
-scope

-scope is a Affix used in English language denoting viewing and observing. It derives from the scientific Latin suffix -scopium, meaning a viewing instrument, which in turn originates from the ancient Greek language verb skopein, to examine....
 here denotes the direct viewing of the spectra
Spectra

spectrum are conditions or values that vary over a continuum.Spectra may also refer to:* Sally Spectra, a fictional character on The Bold and the Beautiful...
 (range) of masses.

History

Francis William Aston
In 1886, Eugen Goldstein
Eugen Goldstein

Eugen Goldstein was a Germany physicist. He was an early investigator of discharge tubes, the discoverer of anode rays, and is sometimes credited with the discovery of the proton....
 observed rays in gas discharges under low pressure that traveled away from the anode and through channels in a perforated cathode
Cathode

A cathode is an electrode through which electric charge flows out of a polarized electrical device. Mnemonic: CCD .From an electrochemical point of view, positively charged ion invariably move toward the cathode and/or negatively charged ion move away from it to balance the electrons arriving from external circuitry....
, opposite to the direction of negatively charged cathode rays (which travel from cathode to anode). Goldstein called these positively charged anode rays "Kanalstrahlen"; the standard translation of this term into English is "canal rays". Wilhelm Wien
Wilhelm Wien

Wilhelm Carl Werner Otto Fritz Franz Wien was a German physics who, in 1893, used theories about heat and electromagnetism to compose Wien's displacement law, which relates the maximum Emission of a blackbody to its temperature....
 found that strong electric or magnetic fields deflected the canal rays and, in 1899, constructed a device with parallel electric and magnetic fields that separated the positive rays according to their charge-to-mass ratio (
Q/m). Wien found that the charge-to-mass ratio depended on the nature of the gas in the discharge tube. English scientist J.J. Thomson later improved on the work of Wien by reducing the pressure to create a mass spectrograph.

Some of the modern techniques of mass spectrometry were devised by Arthur Jeffrey Dempster
Arthur Jeffrey Dempster

Arthur Jeffrey Dempster was a Canada-United States physicist best known for his work in mass spectrometry and his discovery of the uranium isotope uranium-235....
 and F.W. Aston in 1918 and 1919 respectively. In 1989, half of the Nobel Prize in Physics
Nobel Prize in Physics

The Nobel Prize in Physics is awarded once a year by the Royal Swedish Academy of Sciences. It is one of the five Nobel Prizes established by the will of Alfred Nobel in 1895 and awarded since 1901; the others are the Nobel Prize in chemistry, Nobel Prize in literature, Nobel Peace Prize, and Nobel Prize in physiology or medicine....
 was awarded to Hans Dehmelt and Wolfgang Paul for the development of the ion trap technique in the 1950s and 1960s. In 2002, the Nobel Prize in Chemistry
Nobel Prize in Chemistry

The Nobel Prize in Chemistry is awarded annually by the Royal Swedish Academy of Sciences to scientists in the various fields of chemistry. It is one of the five Nobel Prizes established by the will of Alfred Nobel in 1895, awarded for outstanding contributions in chemistry, Nobel Prize in Physics, Nobel Prize in Literature, Nobel Peace Pri...
 was awarded to John Bennett Fenn for the development of electrospray ionization
Electrospray ionization

Electrospray ionization is a technique used in mass spectrometry to produce ions. It is especially useful in producing ions from macromolecules because it overcomes the propensity of these molecules to fragment when ionized....
 (ESI) and Koichi Tanaka
Koichi Tanaka

Koichi Tanaka is a Japanese scientist who won the Nobel Prize in Chemistry in 2002 for developing a novel method for Mass spectrometry analyses of biological macromolecules....
 for the development of soft laser desorption
Soft laser desorption

Soft laser desorption is laser desorption of large molecules that results in ionization without fragmentation. "Soft" in the context of ion formation means forming ions without breaking chemical bonds....
 (SLD) in 1987. However earlier, matrix-assisted laser desorption/ionization
Matrix-assisted laser desorption/ionization

Matrix-assisted laser desorption/ionization is a soft ionization technique used in mass spectrometry, allowing the analysis of biomolecules and large organic chemistry molecules , which tend to be fragile and fragment when ionized by more conventional ionization methods....
 (MALDI), was developed by Franz Hillenkamp and Michael Karas
Michael Karas

Michael Karas is a German physical chemistry scientist and Professor, known for his researches on matrix-assisted laser desorption/ionization , a technique in mass spectrometry....
; this technique has been widely used for protein analysis .

Simplified example

The following example describes the operation of a spectrometer mass analyzer, which is of the sector
Sector instrument

A sector instrument is a general term for a class of mass spectrometer that utilizes a static electric or magnetic sector or some combination of the two as a mass analyzer....
 type. (Other analyzer types are treated below.) Consider a sample of sodium chloride
Sodium chloride

Sodium chloride, also known as common salt, table salt, or halite, is a chemical compound with the chemical formula SodiumChlorine....
  (table salt). In the ion source, the sample is vapor
Vapor

A vapor or vapour is a substance in the gas phase at a temperature lower than its critical temperature.This means that the vapor can be condensation to a liquid or to a solid by increasing its pressure, without reducing the temperature....
ized (turned into gas
Gas

In physics, a gas is a state of matter, consisting of a collection of particles without a definite shape or volume that are in more or less random motion....
) and ionized (transformed into electrically charged particles) into sodium
Sodium

Sodium is an element which has the symbol Na , atomic number 11, atomic mass 23 amu , and a common oxidation number +1. Sodium is a soft, silvery white, highly reactive element and is a member of the alkali metals within "group 1" ....
 (Na+) and chloride
Chloride

The chloride ion is formed when the chemical element chlorine picks up one electron to form an anion Cl−....
 (Cl-) ions. Sodium atoms and ions are monoisotopic
Isotope

Isotopes are any of the different types of atoms of the same chemical element, each having a different atomic mass . Isotopes of an element have atomic nucleus with the same number of protons but different numbers of neutron....
, with a mass of about 23 amu. Chloride atoms and ions come in two isotopes with masses of approximately 35 amu (at a natural abundance of about 75 percent) and approximately 37 amu (at a natural abundance of about 25 percent). The analyzer part of the spectrometer contains electric
Electric field

In physics, the space surrounding an electric charge or in the presence of a time-varying magnetic field has a property called an electric field ....
 and magnetic
Magnetic field

A magnetism field is a vector field which can exert a magnetic force on moving electric charges and on magnetic dipoles . When placed in a magnetic field, magnetic dipoles tend to align their axes parallel to the magnetic field....
 fields, which exert forces on ions traveling through these fields. The speed of a charged particle may be increased or decreased while passing through the electric field, and its direction may be altered by the magnetic field. The magnitude of the deflection of the moving ion's trajectory depends on its mass-to-charge ratio. By Newton's second law of motion
Newton's laws of motion

Newton's laws of motion are three physical laws that form the basis for classical mechanics, Direct relationship the forces acting on a Physical body to the motion of the body....
, lighter ions get deflected by the magnetic force more than heavier ions. The streams of sorted ions pass from the analyzer to the detector, which records the relative abundance of each ion type. This information is used to determine the chemical element composition of the original sample (i.e. that both sodium and chlorine are present in the sample) and the isotopic composition of its constituents (the ratio of 35Cl to 37Cl).

Instrumentation


Ion source technologies

The ion source is the part of the mass spectrometer that ionizes the material under analysis (the analyte). The ions are then transported by magnetic
Magnetic field

A magnetism field is a vector field which can exert a magnetic force on moving electric charges and on magnetic dipoles . When placed in a magnetic field, magnetic dipoles tend to align their axes parallel to the magnetic field....
 or electric field
Electric field

In physics, the space surrounding an electric charge or in the presence of a time-varying magnetic field has a property called an electric field ....
s to the mass analyzer.

Techniques for ion
Ion

An ion is an atom or molecule which has lost or gained one or more electrons, giving it a positive or negative electrical charge. According to the Bohr_model this will be from or in the outer shield 'n'....
ization have been key to determining what types of samples can be analyzed by mass spectrometry. Electron ionization
Electron ionization

Electron ionization is an ionization method in which energetic electrons interact with gas phase atoms or molecules to produce ions. The technique widely used in mass spectrometry, particularly for organic chemistry molecules....
 and chemical ionization
Chemical ionization

Chemical ionization is an ionization technique used in mass spectrometry. Chemical ionization is a lower energy process than electron ionization....
 are used for gas
Gas

In physics, a gas is a state of matter, consisting of a collection of particles without a definite shape or volume that are in more or less random motion....
es and vapor
Vapor

A vapor or vapour is a substance in the gas phase at a temperature lower than its critical temperature.This means that the vapor can be condensation to a liquid or to a solid by increasing its pressure, without reducing the temperature....
s. In chemical ionization
Chemical ionization

Chemical ionization is an ionization technique used in mass spectrometry. Chemical ionization is a lower energy process than electron ionization....
 sources, the analyte is ionized by chemical ion-molecule reactions during collisions in the source. Two techniques often used with liquid
Liquid

Liquid is one of the principal states of matter. A liquid is a fluid that has the particles loose and can freely form a distinct surface at the boundaries of its bulk material....
 and solid
Solid

A solid object is in the states of matter characterized by resistance to deformation and changes of volume. In other words, it has high values both of Young's modulus and of shear modulus; this contrasts e.g....
 biological samples include electrospray ionization
Electrospray ionization

Electrospray ionization is a technique used in mass spectrometry to produce ions. It is especially useful in producing ions from macromolecules because it overcomes the propensity of these molecules to fragment when ionized....
 (invented by John Fenn) and matrix-assisted laser desorption/ionization
Matrix-assisted laser desorption/ionization

Matrix-assisted laser desorption/ionization is a soft ionization technique used in mass spectrometry, allowing the analysis of biomolecules and large organic chemistry molecules , which tend to be fragile and fragment when ionized by more conventional ionization methods....
 (MALDI, developed by K. Tanaka and separately by M. Karas and F. Hillenkamp). Inductively coupled plasma
ICP-MS

ICP-MS is a type of mass spectrometry that is highly sensitive and capable of the determination of a range of metals and several non-metals at concentrations below one part in 1012....
 (ICP) sources are used primarily for cation analysis of a wide array of sample types. In this type of Ion Source Technology, a 'flame' of plasma that is electrically neutral overall, but that has had a substantial fraction of its atoms ionised by high temperature) is used to atomize introduced sample molecules and to further strip the outer electrons from those atoms. The plasma is usually generated from argon gas, since the first ionization energy of argon atoms is higher than the first of any other elements except He, O, F and Ne, but lower than the second ionization energy of all except the most electropositive metals. The heating is achieved by a radio-frequency current passed through a coil surrounding the plasma. Others include glow discharge, field desorption
Field desorption

Field desorption /field ionization refers to an ion source for mass spectrometry first reported by Beckey in 1969. In field ionization, a high-potential electric field is applied to an emitter with a sharp surface, such as a razor blade, or more commonly, a filament from which tiny "whiskers" have formed....
 (FD), fast atom bombardment
Fast atom bombardment

Fast atom bombardment is an ionization technique used in mass spectrometry. The material to be analyzed is mixed with a non-volatile chemical protection environment called a Matrix Isolation and is bombarded under vacuum with a high energy beam of atoms....
 (FAB), thermospray
Thermospray

Thermospray is a form of atmospheric pressure ionization in mass spectrometry. It transfers ions from the liquid phase to the gas phase for analysis....
, desorption/ionization on silicon (DIOS), Direct Analysis in Real Time (DART)
DART ion source

DART is an atmospheric pressure ion source that instantaneously ionizes gases, liquids and solids in open air under ambient conditions. It was developed in 2005 by Laramee and Cody and is now marketed commercially by JEOL....
, atmospheric pressure chemical ionization
Atmospheric pressure chemical ionization

Atmospheric pressure chemical ionization is an Ion source used in mass spectrometry. It is a form of chemical ionization which takes place at atmospheric pressure....
 (APCI), secondary ion mass spectrometry
Secondary ion mass spectrometry

Secondary ion mass spectrometry is a technique used in materials science and surface science to analyze the composition of solid surfaces and thin films by sputtering the surface of the specimen with a focused primary ion beam and collecting and analyzing ejected secondary ions....
 (SIMS), spark ionization
Spark ionization

Spark ionization is a method used to produce gas phase ions from a solid sample. The prepared solid sample is vaporized and partially ionized by an intermittent discharge or spark....
 and thermal ionization
Thermal ionization

In thermal ionization, also referred to as surface ionization, chemically-purified material loaded onto a Electrical filament which is then heated to cause some of the material to be ionized as it boils off the hot filament....
 (TIMS). Ion Attachment Ionization is a newer soft ionization technique that allows for fragmentation free analysis.

Mass analyzer technologies

Mass analyzers separate the ions according to their mass-to-charge ratio
Mass-to-charge ratio

The mass-to-charge ratio, is a physical quantity that is widely used in the electrodynamics of charged particles, e.g. in electron optics and ion optics....
. The following two laws govern the dynamics of charged particles in electric and magnetic fields in vacuum:

(Lorentz force law)

(Newton's second law of motion)

where
F is the force applied to the ion, m is the mass of the ion, a is the acceleration, Q is the ion charge, E is the electric field, and v x B is the vector cross product of the ion velocity and the magnetic field

Equating the above expressions for the force applied to the ion yields:



This differential equation is the classic equation of motion for charged particles. Together with the particle's initial conditions, it completely determines the particle's motion in space and time in terms of
m/Q. Thus mass spectrometers could be thought of as "mass-to-charge spectrometers". When presenting data, it is common to use the (officially) dimensionless m/z, where z is the number of elementary charge
Elementary charge

The elementary charge, usually denoted e, is the electric charge carried by a single proton, or equivalently, the negative of the electric charge carried by a single electron....
s (
e) on the ion (z=Q/e). This quantity, although it is informally called the mass-to-charge ratio, more accurately speaking represents the ratio of the mass number and the charge number, z.

There are many types of mass analyzers, using either static or dynamic fields, and magnetic or electric fields, but all operate according to the above differential equation. Each analyzer type has its strengths and weaknesses. Many mass spectrometers use two or more mass analyzers for tandem mass spectrometry (MS/MS). In addition to the more common mass analyzers listed below, there are others designed for special situations.

Sector
A
sector field mass analyzer uses an electric and/or magnetic field to affect the path and/or velocity
Velocity

In physics, velocity is defined as the Derivative of Position vector. It is a vector physical quantity; both speed and direction are required to define it....
 of the charged
Electric charge

Electric charge is a fundamental conserved property of some subatomic particles, which determines their electromagnetic interaction. Electrically charged matter is influenced by, and produces, electromagnetic fields....
 particles in some way. As shown above, sector instrument
Sector instrument

A sector instrument is a general term for a class of mass spectrometer that utilizes a static electric or magnetic sector or some combination of the two as a mass analyzer....
s bend the trajectories of the ions as they pass through the mass analyzer, according to their mass-to-charge ratios, deflecting the more charged and faster-moving, lighter ions more. The analyzer can be used to select a narrow range of
m/z or to scan through a range of m/z to catalog the ions present.

Time-of-flight
The time-of-flight
Time-of-flight

The time of flight describes the method used to measure the time that it takes for a particle, object or stream to reach a detector while traveling over a known distance....
 (TOF) analyzer uses an electric field
Electric field

In physics, the space surrounding an electric charge or in the presence of a time-varying magnetic field has a property called an electric field ....
 to accelerate the ions through the same potential
Voltage

Electrical tension is the potential difference between two points of an electrical or electronic circuit, expressed in volts. It is the measurement of the potential for an electric field to cause an electric current in an electrical conductor....
, and then measures the time they take to reach the detector. If the particles all have the same charge, the kinetic energies
Kinetic energy

The kinetic energy of an object is the extra energy which it possesses due to its motion. It is defined as the mechanical work needed to accelerate a body of a given mass from rest to its current velocity....
 will be identical, and their velocities
Velocity

In physics, velocity is defined as the Derivative of Position vector. It is a vector physical quantity; both speed and direction are required to define it....
 will depend only on their mass
Mass

In physical science, mass refers to the degree of acceleration a body acquires when subject to a force: bodies with greater mass are accelerated less by the same force....
es. Lighter ions will reach the detector first.

Quadrupole
Quadrupole mass analyzer
Quadrupole mass analyzer

The quadrupole mass analyzer is one type of mass analyzer used in mass spectrometry. As the name implies, it consists of 4 circular rods, set perfectly parallel to each other....
s use oscillating electrical fields to selectively stabilize or destabilize the paths of ions passing through a radio frequency
Radio frequency

Radio frequency is a frequency or rate of oscillation within the range of about 3 Hz to 300 GHz. This range corresponds to frequency of alternating current electrical signals used to produce and detect radio waves....
 (RF) quadrupole
Quadrupole

A quadrupole or quadrapole is one of a sequence of configurations of ? for example ? electric charge or current, or gravitational mass that can exist in ideal form, but it is usually just part of a multipole expansion of a more complex structure reflecting various orders of complexity....
 field. Only a single mass/charge ratio is passed through the system at any time, but changes to the potentials on magnetic lenses allows a wide range of m/z values to be swept rapidly, either continuously or in a succession of discrete hops. A quadrupole mass analyzer acts as a mass-selective filter and is closely related to the Quadrupole ion trap
Quadrupole ion trap

A quadrupole ion trap exists in both linear and 3D varieties and refers to an ion trap that uses constant direct current and radio frequency oscillating alternating current electric fields to trap ions....
, particularly the linear quadrupole ion trap except that it is desinged to pass the untrapped ions rather than collected the trapped ones, and is for that reason referred to as a transmission quadrupole. A common variation of the quadrupole is the triple quadrupole. Triple quadrupole mass spectrometers have three quadrupoles arranged parallel to incoming ions. The first quadrupole acts as a mass filter. The second quadrupole acts as a collision cell where selected ions are broken into fragments. The resulting fragments are scanned by the third quadrupole.

Quadrupole ion trap
The quadrupole ion trap
Quadrupole ion trap

A quadrupole ion trap exists in both linear and 3D varieties and refers to an ion trap that uses constant direct current and radio frequency oscillating alternating current electric fields to trap ions....
 works on the same physical principles as the quadrupole mass analyzer, but the ions are trapped and sequentially ejected. Ions are created and trapped in a mainly quadrupole RF potential and separated by m/Q, non-destructively or destructively.

There are many mass/charge separation and isolation methods but most commonly used is the mass instability mode in which the RF potential is ramped so that the orbit of ions with a mass are stable while ions with mass become unstable and are ejected on the
z-axis onto a detector.

Ions may also be ejected by the resonance excitation method, whereby a supplemental oscillatory excitation voltage is applied to the endcap electrodes, and the trapping voltage amplitude and/or excitation voltage frequency is varied to bring ions into a resonance condition in order of their mass/charge ratio.

The cylindrical ion trap mass spectrometer is a derivative of the quadrupole ion trap mass spectrometer.

Linear quadrupole ion trap
A linear quadrupole ion trap is similar to a quadrupole ion trap, but it traps ions in a two dimensional quadrupole field, instead of a three dimensional quadrupole field as in a quadrupole ion trap. Thermo Fisher's LTQ ("linear trap quadrupole") is an example of the linear ion trap.

Fourier transform ion cyclotron resonance
Fourier transform mass spectrometry, or more precisely Fourier transform ion cyclotron resonance
Fourier transform ion cyclotron resonance

Fourier transform ion cyclotron resonance mass spectrometry, also known as Fourier transform mass spectrometry, is a type of mass analyzer for determining the mass-to-charge ratio of ions based on the ion cyclotron resonance of the ions in a fixed magnetic field....
 MS, measures mass by detecting the image current produced by ions cyclotron
Cyclotron

A cyclotron is a type of particle accelerator. Cyclotrons accelerate charged particles using a high-frequency, alternating voltage . A perpendicular magnetic field causes the particles to spiral almost in a circle so that they re-encounter the accelerating voltage many times....
ing in the presence of a magnetic field. Instead of measuring the deflection of ions with a detector such as an electron multiplier
Electron multiplier

An electron multiplier is a vacuum-tube structure that multiplies incident charges. In a process called secondary emission, a single electron can, when bombarded on metal induce emission of roughly 1 to 3 electrons....
, the ions are injected into a Penning trap
Penning trap

Penning traps are devices for the storage of charged particles using a constant static magnetic field and a spatially inhomogeneous static electric field....
 (a static electric/magnetic ion trap
Ion trap

An ion trap is a combination of electric or magnetic fields that captures ions in a region of a vacuum system or tube. The two most common types of ion traps are the Penning trap and the Paul trap ....
) where they effectively form part of a circuit. Detectors at fixed positions in space measure the electrical signal of ions which pass near them over time, producing a periodic signal. Since the frequency of an ion's cycling is determined by its mass to charge ratio, this can be deconvoluted
Deconvolution

In mathematics, deconvolution is an Algorithm process used to reverse the effects of convolution on recorded data. The concept of deconvolution is widely used in the techniques of signal processing and ....
 by performing a Fourier transform
Fourier transform

In mathematics, Fourier analysis is a subject area which grew out of the study of Fourier series. The subject began with trying to understand when it was possible to represent general functions by sums of simpler trigonometric functions....
 on the signal. FTMS has the advantage of high sensitivity (since each ion is "counted" more than once) and much higher resolution and thus precision.

Ion cyclotron resonance
Ion cyclotron resonance

Ion cyclotron resonance is a phenomenon related to the movement of ions in a magnetic field. It is used for accelerating ions in a cyclotron, and for measuring the masses of an ionized analyte in mass spectrometry, particularly with Fourier transform ion cyclotron resonance mass spectrometers....
 (ICR) is an older mass analysis technique similar to FTMS except that ions are detected with a traditional detector. Ions trapped in a Penning trap
Penning trap

Penning traps are devices for the storage of charged particles using a constant static magnetic field and a spatially inhomogeneous static electric field....
 are excited by an RF electric field until they impact the wall of the trap, where the detector is located. Ions of different mass are resolved according to impact time.

Very similar nonmagnetic FTMS has been performed, where ions are electrostatically trapped in an orbit around a central, spindle shaped electrode. The electrode confines the ions so that they both orbit around the central electrode and oscillate back and forth along the central electrode's long axis. This oscillation generates an image current in the detector plates which is recorded by the instrument. The frequencies of these image currents depend on the mass to charge ratios of the ions. Mass spectra are obtained by Fourier transformation of the recorded image currents.

Similar to Fourier transform ion cyclotron resonance
Fourier transform ion cyclotron resonance

Fourier transform ion cyclotron resonance mass spectrometry, also known as Fourier transform mass spectrometry, is a type of mass analyzer for determining the mass-to-charge ratio of ions based on the ion cyclotron resonance of the ions in a fixed magnetic field....
 mass spectrometers, Orbitraps have a high mass accuracy, high sensitivity and a good dynamic range.

Detector

The final element of the mass spectrometer is the detector. The detector records either the charge induced or the current produced when an ion passes by or hits a surface. In a scanning instrument, the signal produced in the detector during the course of the scan versus where the instrument is in the scan (at what
m/Q) will produce a mass spectrum
Mass spectrum

A mass spectrum is an intensity vs. m/z plot representing a chemical analysis. Hence, the mass spectrum of a sample is a pattern representing the distribution of components by mass in a sample....
, a record of ions as a function of
m/Q.

Typically, some type of electron multiplier
Electron multiplier

An electron multiplier is a vacuum-tube structure that multiplies incident charges. In a process called secondary emission, a single electron can, when bombarded on metal induce emission of roughly 1 to 3 electrons....
 is used, though other detectors including Faraday cup
Faraday cup

A Faraday cup is a metal cup designed to catch charged particles in vacuum. The resulting current can be measured and used to determine the number of ions or electrons hitting the cup....
s and ion-to-photon detectors are also used. Because the number of ions leaving the mass analyzer at a particular instant is typically quite small, considerable amplification is often necessary to get a signal. Microchannel Plate Detector
Microchannel plate detector

A micro-channel plate is a planar component used for detection of particles and impinging radiation . It is closely related to an electron multiplier, as both intensify single particles or photons by the multiplication of electrons via secondary emission....
s are commonly used in modern commercial instruments. In FTMS and Orbitrap
Orbitrap

An orbitrap is a type of mass spectrometer invented by Alexander Makarov. It consists of an outer barrel-like electrode and a coaxial inner spindle-like electrode that form an electrostatic field with quadro-logarithmic potential distribution....
s, the detector consists of a pair of metal surfaces within the mass analyzer/ion trap region which the ions only pass near as they oscillate. No DC current is produced, only a weak AC image current is produced in a circuit between the electrodes. Other inductive detectors have also been used.

Tandem mass spectrometry

A tandem mass spectrometer is one capable of multiple rounds of mass spectrometry, usually separated by some form of molecule fragmentation. For example, one mass analyzer can isolate one peptide
Peptide

Peptides are short polymers formed from the linking, in a defined order, of a-amino acids. The link between one amino acid residue and the next is known as an amide chemical bond or a peptide bond....
 from many entering a mass spectrometer. A second mass analyzer then stabilizes the peptide ions while they collide with a gas, causing them to fragment by collision-induced dissociation
Collision-induced dissociation

In mass spectrometry, collision-induced dissociation , referred to by some as collisionally activated dissociation , is a mechanism by which to fragment molecular ions in the gas phase....
 (CID). A third mass analyzer then sorts the fragments produced from the peptides. Tandem MS can also be done in a single mass analyzer over time, as in a quadrupole ion trap
Quadrupole ion trap

A quadrupole ion trap exists in both linear and 3D varieties and refers to an ion trap that uses constant direct current and radio frequency oscillating alternating current electric fields to trap ions....
. There are various methods for fragmenting molecules for tandem MS, including collision-induced dissociation
Collision-induced dissociation

In mass spectrometry, collision-induced dissociation , referred to by some as collisionally activated dissociation , is a mechanism by which to fragment molecular ions in the gas phase....
 (CID), electron capture dissociation
Electron capture dissociation

Electron capture dissociation is a electron?capture mass spectrometry method of fragmenting gas phase ions for tandem mass spectrometric analysis ....
 (ECD), electron transfer dissociation
Electron transfer dissociation

Electron transfer dissociation is a method to fragment ions in a mass spectrometer. Similar to electron capture dissociation, ETD induces fragmentation of cations by transferring electrons to them....
 (ETD), infrared multiphoton dissociation
Infrared multiphoton dissociation

Infrared multiphoton dissociation is a technique used in mass spectrometry to fragment molecules in the gas phase usually for structural analysis of the original molecule....
 (IRMPD) and blackbody infrared radiative dissociation
Blackbody infrared radiative dissociation

In mass spectrometry blackbody infrared radiative dissociation is a method for fragmenting gas phase ions for tandem mass spectrometric analysis ....
 (BIRD). An important application using tandem mass spectrometry is in protein identification
Mass spectrometry

Mass spectrometry is an analytical technique for the determination of the elemental composition of a sample or molecule. It is also used for elucidating the chemical structures of molecules, such as peptides and other chemical compounds....
.

Tandem mass spectrometry enables a variety of experimental sequences. Many commercial mass spectrometers are designed to expedite the execution of such routine sequences as single reaction monitoring (SRM), multiple reaction monitoring (MRM), and precursor ion scan. In SRM, the first analyzer allows only a single mass through and the second analyzer monitors for a single user defined fragment ion. MRM allows for multiple user defined fragment ions. SRM and MRM are most often used with scanning instruments where the second mass analysis event is duty cycle
Duty cycle

In telecommunications and electronics, the duty cycle is the fraction of time that a system is in an "active" state. In particular, it is used in the following contexts:...
 limited. These experiments are used to increase specificity of detection of known molecules, notably in pharmacokinetic studies. Precursor ion scan refers to monitoring for a specific loss from the precursor ion. The first and second mass analyzers scan across the spectrum as partitioned by a user defined
m/z value. This experiment is used to detect specific motif
Motif

motif may refer to:In a creative work:* Motif , a perceivable or salient recurring fragment or succession of notes* Motif , any recurring element in a story that has symbolic significance...
s within unknown molecules.

An important type of Tandem mass spectrometry is Accelerator Mass Spectrometry
Accelerator mass spectrometry

Accelerator mass spectrometry differs from other forms of mass spectrometry in that it accelerates ions to extraordinarily high kinetic energy before mass analysis....
 (AMS), which uses very high voltages, usually in the mega-volt range, to accelerate negative ions into a type of tandem mass spectrometer. One of the most important applications of this technique is radiocarbon dating
Radiocarbon dating

Radiocarbon dating, or carbon dating, is a radiometric dating method that uses the naturally occurring radioisotope carbon-14 to determine the age of carbonaceous materials up to about 60,000 years....
.

Common mass spectrometer configurations and techniques


When a specific configuration of source, analyzer, and detector becomes conventional in practice, often a compound acronym
List of mass spectrometry acronyms

This is a compilation of acronyms commonly used in mass spectrometry. ...
 arises to designate it, and the compound acronym may be more well known among nonspectrometrists than the component acronyms. The epitome of this is MALDI-TOF, which simply refers to combining a matrix-assisted laser desorption/ionization
Matrix-assisted laser desorption/ionization

Matrix-assisted laser desorption/ionization is a soft ionization technique used in mass spectrometry, allowing the analysis of biomolecules and large organic chemistry molecules , which tend to be fragile and fragment when ionized by more conventional ionization methods....
 source with a time-of-flight
Time-of-flight

The time of flight describes the method used to measure the time that it takes for a particle, object or stream to reach a detector while traveling over a known distance....
 mass analyzer. The MALDI-TOF moniker is more widely recognized by the non-mass spectrometrist scientist than MALDI or TOF individually. Other examples include inductively coupled plasma-mass spectrometry (ICP-MS)
ICP-MS

ICP-MS is a type of mass spectrometry that is highly sensitive and capable of the determination of a range of metals and several non-metals at concentrations below one part in 1012....
, accelerator mass spectrometry (AMS)
Accelerator mass spectrometry

Accelerator mass spectrometry differs from other forms of mass spectrometry in that it accelerates ions to extraordinarily high kinetic energy before mass analysis....
, Thermal ionization-mass spectrometry (TIMS) and spark source mass spectrometry (SSMS)
Spark ionization

Spark ionization is a method used to produce gas phase ions from a solid sample. The prepared solid sample is vaporized and partially ionized by an intermittent discharge or spark....
. Sometimes the use of the generic "MS" actually connotes a very specific mass analyzer and detection system, as is the case with AMS, which is always sector based.

Certain applications of mass spectrometry have developed monikers that although strictly speaking they would seem to refer to a broad application, in practice have come instead to connote a specific or a limited number of instrument configurations. An example of this is isotope ratio mass spectrometry (IRMS), which refers in practice to the use of a limited number of sector based mass analyzers; this name is used to refer to both the application and the instrument used for the application.

Chromatographic techniques combined with mass spectrometry

An important enhancement to the mass resolving and mass determining capabilities of mass spectrometry is using it in tandem with chromatographic
Chromatography

Chromatography is the collective term for a family of laboratory techniques for the separation of mixtures. It involves passing a mixture dissolved in a "mobile phase" through a stationary phase, which separates the analyte to be measured from other molecules in the mixture and allows it to be isolated....
 separation techniques.

Gas chromatography

A common combination is gas
Gas

In physics, a gas is a state of matter, consisting of a collection of particles without a definite shape or volume that are in more or less random motion....
 chromatography-mass spectrometry (GC/MS or GC-MS). In this technique, a gas chromatograph is used to separate different compounds. This stream of separated compounds is fed online into the ion
Ion

An ion is an atom or molecule which has lost or gained one or more electrons, giving it a positive or negative electrical charge. According to the Bohr_model this will be from or in the outer shield 'n'....
 source, a metal
Metal

In chemistry, a metal is a chemical element whose atoms readily lose electrons to form positive ions , and form metallic bonds between other metal atoms and ionic bonds between nonmetal atoms....
lic filament to which voltage
Voltage

Electrical tension is the potential difference between two points of an electrical or electronic circuit, expressed in volts. It is the measurement of the potential for an electric field to cause an electric current in an electrical conductor....
 is applied. This filament emits electrons which ionize the compounds. The ions can then further fragment, yielding predictable patterns. Intact ions and fragments pass into the mass spectrometer's analyzer and are eventually detected.

Liquid chromatography

Similar to gas chromatography MS (GC/MS), liquid chromatography mass spectrometry (LC/MS or LC-MS) separates compounds chromatographically before they are introduced to the ion source and mass spectrometer. It differs from GC/MS in that the mobile phase is liquid, usually a mixture of water
Water

Water is a common chemical substance that is essential for the survival of all known forms of life. In typical usage, water refers only to its liquid form or States of matter, but the substance also has a solid state, ice, and a gaseous state, water vapor or steam....
 and organic solvent
Solvent

A solvent is a liquid or gas that dissolves a solid, liquid, or gaseous solute, resulting in a solution.The most common solvent in everyday life is water....
s, instead of gas. Most commonly, an electrospray ionization
Electrospray ionization

Electrospray ionization is a technique used in mass spectrometry to produce ions. It is especially useful in producing ions from macromolecules because it overcomes the propensity of these molecules to fragment when ionized....
 source is used in LC/MS. There are also some newly developed ionization techniques like laser spray
Laser spray

Laser spray is a new liquid chromatography/mass spectrometry interface. Explosive vaporization and mist formation occur when an aqueous solution effusing out from the tip of the stainless steel capillary is irradiated from the opposite side of the capillary by a 10.6 ?m infrared laser....
.

Ion mobility

Ion mobility spectrometry/mass spectrometry (IMS/MS or IMMS) is a technique where ions are first separated by drift time through some neutral gas under an applied electrical potential gradient before being introduced into a mass spectrometer. Drift time is a measure of the radius relative to the charge of the ion. The duty cycle
Duty cycle

In telecommunications and electronics, the duty cycle is the fraction of time that a system is in an "active" state. In particular, it is used in the following contexts:...
 of IMS (the time over which the experiment takes place) is longer than most mass spectrometric techniques, such that the mass spectrometer can sample along the course of the IMS separation. This produces data about the IMS separation and the mass-to-charge ratio of the ions in a manner similar to LC/MS
Liquid chromatography-mass spectrometry

Liquid chromatography-mass spectrometry is an analytical chemistry technique that combines the physical separation capabilities of HPLC with the mass analysis capabilities of mass spectrometry....
.

The duty cycle of IMS is short relative to liquid chromatography or gas chromatography separations and can thus be coupled to such techniques, producing triple modalities such as LC/IMS/MS.

Data and analysis


Data representations

Mass spectrometry produces various types of data. The most common data representation is the mass spectrum
Mass spectrum

A mass spectrum is an intensity vs. m/z plot representing a chemical analysis. Hence, the mass spectrum of a sample is a pattern representing the distribution of components by mass in a sample....
.

Certain types of mass spectrometry data are best represented as a mass chromatogram
Mass chromatogram

A mass chromatogram is a representation of mass spectrometry data as a chromatogram, where the x-axis represents time and the y-axis represents signal intensity....
. Types of chromatograms include selected ion monitoring (SIM), total ion current (TIC), and selected reaction monitoring chromatogram (SRM), among many others.

Other types of mass spectrometry data are well represented as a three dimensional contour map. In this form, the mass-to-charge,
m/z is on the x-axis, intensity the y-axis, and an additional experimental parameter, such as time, is recorded on the z-axis.

Data analysis

Basics

Mass spectrometry data analysis is a complicated subject matter that is very specific to the type of experiment producing the data. There are general subdivisions of data that are fundamental to understand any data.

Many mass spectrometers work in either
negative ion mode or positive ion mode. It is very important to know whether the observed ions are negatively or positively charged. This is often important in determining the neutral mass but it also indicates something about the nature of the molecules.

Different types of ion source result in different arrays of fragments produced from the original molecules. An electron ionization source produces many fragments and mostly odd electron species with one charge, whereas an electrospray source usually produces quasimolecular even electron species that may be multiply charged. Tandem mass spectrometry purposely produces fragment ions post-source and can drastically change the sort of data achieved by an experiment.

By understanding the origin of a sample, certain expectations can be assumed as to the component molecules of the sample and their fragmentations. A sample from a synthesis/manufacturing process will likely contain impurities chemically related to the target component. A relatively crudely prepared biological sample will likely contain a certain amount of salt, which may form adduct
Adduct

An adduct is a product of a direct addition of two or more distinct molecules, resulting in a single reaction product containing all atoms of all components, with formation of two chemical bonds and a net reduction in bond multiplicity in at least one of the reactants....
s with the analyte molecules in certain analyses.

Results can also depend heavily on how the sample was prepared and how it was run/introduced. An important example is the issue of which matrix is used for MALDI spotting, since much of the energetics of the desorption/ionization event is controlled by the matrix rather than the laser power. Sometimes samples are spiked with sodium or another ion-carrying species to produce adducts rather than a protonated species.

The greatest source of trouble when non-mass spectrometrists try to conduct mass spectrometry on their own or collaborate with a mass spectrometrist is inadequate definition of the research goal of the experiment. Adequate definition of the experimental goal is a prerequisite for collecting the proper data and successfully interpreting it. Among the determinations that can be achieved with mass spectrometry are molecular mass, molecular structure, and sample purity. Each of these questions requires a different experimental procedure. Simply asking for a "mass spec" will most likely not answer the real question at hand.

Interpretation of mass spectra Since the precise structure
Chemical structure

A Chemical structure includes molecular geometry, electronic structure and crystal structure of a chemical compound. Molecular geometry refers to the spatial arrangement of atoms in a molecule and the chemical bonds that hold the atoms together....
 or peptide sequence
Peptide sequence

Peptide sequence or amino acid sequence is the order in which amino acid residues, connected by peptide bonds, lie in the chain in peptides and proteins....
 of a molecule is deciphered through the set of fragment masses, the interpretation of mass spectra
Mass spectrum

A mass spectrum is an intensity vs. m/z plot representing a chemical analysis. Hence, the mass spectrum of a sample is a pattern representing the distribution of components by mass in a sample....
 requires combined use of various techniques. Usually the first strategy for identifying an unknown compound is to compare its experimental mass spectrum against a library of mass spectra. If the search comes up empty, then manual interpretation or software assisted interpretation of mass spectra
Mass spectrometry software

Mass spectrometry software is software used for data acquisition, analysis, or representation in mass spectrometry....
 are performed. Computer simulation of ionization
Ionization

Ionization is the physics process of converting an atom or molecule into an ion by adding or removing charged particles such as electrons or other ions....
 and fragmentation processes occurring in mass spectrometer is the primary tool for assigning structure or peptide sequence to a molecule. An
a priori
A priori

A priori may refer to:* A priori , a type of constructed language* A priori , a knowledge of the actual population* A priori and a posteriori , used to distinguish two types of propositional knowledge...
structural information is fragmented in silico
In silico

In silico is an expression used to mean "performed on computer or via computer simulation." The phrase is coined in analogy to the Latin language phrases in vivo and in vitro which are commonly used in biology and refer to experiments done in living organisms and outside of living organisms, respectively....
and the resulting pattern is compared with observed spectrum. Such simulation is often supported by a fragmentation library that contains published patterns of known decomposition reactions. Software
Mass spectrometry software

Mass spectrometry software is software used for data acquisition, analysis, or representation in mass spectrometry....
 taking advantage of this idea has been developed for both small molecules and proteins
Peptide mass fingerprinting

Peptide mass fingerprinting is an analytical technique for protein identification that was developed in 1993 by several groups independently. In this method, the unknown protein of interest is first cleaved into smaller peptides, whose absolute masses can be accurately measured with a mass spectrometer such as MALDI-TOF or Electrospray....
.

Another way of interpreting mass spectra involves spectra with accurate mass
Mass (mass spectrometry)

The mass recorded by a mass spectrometer can refer to different physical quantities depending on the characteristics of the instrument and the manner in which the mass spectrum is displayed....
. A mass-to-charge ratio value (
m/z) with only integer precision can represent an immense number of theoretically possible ion structures. More precise mass figures significantly reduce the number of candidate molecular formulas
Molecule

In chemistry, a molecule is defined as a sufficiently stable, electric charge neutral group of at least two atoms in a definite arrangement held together by very strong chemical bonds....
, albeit each can still represent large number of structurally diverse compounds. A computer algorithm called formula generator calculates all molecular formulas that theoretically fit a given mass
Mass (mass spectrometry)

The mass recorded by a mass spectrometer can refer to different physical quantities depending on the characteristics of the instrument and the manner in which the mass spectrum is displayed....
 with specified tolerance.

A recent technique for structure elucidation in mass spectrometry, called precursor ion fingerprinting identifies individual pieces of structural information by conducting a search of the tandem spectra
Tandem mass spectrometry

Tandem mass spectrometry, also known as MS/MS, involves multiple steps of mass spectrometry selection, with some form of fragmentation occurring in between the stages....
 of the molecule under investigation against a library of the product-ion spectra
Tandem mass spectrometry

Tandem mass spectrometry, also known as MS/MS, involves multiple steps of mass spectrometry selection, with some form of fragmentation occurring in between the stages....
 of structurally characterized precursor ions.

Applications


Isotope ratio MS: isotope dating and tracking

Mass Spectrometer Awi Hg
Mass spectrometry is also used to determine the isotopic
Isotope

Isotopes are any of the different types of atoms of the same chemical element, each having a different atomic mass . Isotopes of an element have atomic nucleus with the same number of protons but different numbers of neutron....
 composition of elements within a sample. Differences in mass among isotopes of an element are very small, and the less abundant isotopes of an element are typically very rare, so a very sensitive instrument is required. These instruments, sometimes referred to as isotope ratio mass spectrometers (IR-MS), usually use a single magnet to bend a beam of ionized particles towards a series of Faraday cup
Faraday cup

A Faraday cup is a metal cup designed to catch charged particles in vacuum. The resulting current can be measured and used to determine the number of ions or electrons hitting the cup....
s which convert particle impacts to electric current
Electric current

Electric current is the flow of electric charge. The electric charge may be either electrons or ions.The International System of Units unit of electric current intensity is the ampere....
. A fast on-line analysis of deuterium
Deuterium

Deuterium, also called heavy hydrogen, is a stable isotope of hydrogen with a natural abundance in the oceans of Earth of approximately one atom in 6500 of hydrogen ....
 content of water can be done using Flowing afterglow mass spectrometry
Flowing afterglow mass spectrometry

Flowing afterglow mass spectrometry, FA-MS, is a sensitive and quantitative mass spectrometry analytical approach that offers a route to on-line, real-time deuterium abundance measurements in water vapour in breath and above aqueous liquids, including urine and serum....
, FA-MS. Probably the most sensitive and accurate mass spectrometer for this purpose is the accelerator mass spectrometer
Accelerator mass spectrometry

Accelerator mass spectrometry differs from other forms of mass spectrometry in that it accelerates ions to extraordinarily high kinetic energy before mass analysis....
 (AMS). Isotope ratios are important markers of a variety of processes. Some isotope ratios are used to determine the age of materials for example as in carbon dating. Labelling with stable isotopes is also used for protein quantification. (see Protein quantitation
Mass spectrometry

Mass spectrometry is an analytical technique for the determination of the elemental composition of a sample or molecule. It is also used for elucidating the chemical structures of molecules, such as peptides and other chemical compounds....
 below)

Trace gas analysis

Several techniques use ions created in a dedicated ion source injected into a flow tube or a drift tube: selected ion flow tube
SIFT-MS selected ion flow tube mass spectrometry

Selected ion flow tube mass spectrometry is a sensitive and quantitative mass spectrometry technique for trace gas analyses using chemical ionisation of sample trace gases by selected positive ions during a well-defined time period along a flow tube....
 (SIFT-MS), and proton transfer reaction (PTR-MS), are variants of chemical ionization
Chemical ionization

Chemical ionization is an ionization technique used in mass spectrometry. Chemical ionization is a lower energy process than electron ionization....
 dedicated for trace gas analysis of air, breath or liquid headspace using well defined reaction time allowing calculations of analyte concentrations from the known reaction kinetics without the need for internal standard or calibration.

Atom probe

An atom probe
Atom probe

The atom probe is an atomic-resolution microscope used in materials science that was invented in 1967 by Erwin Wilhelm M?ller, J. A. Panitz, and S....
 is an instrument that combines time-of-flight
Time-of-flight

The time of flight describes the method used to measure the time that it takes for a particle, object or stream to reach a detector while traveling over a known distance....
 mass spectrometry and field ion microscopy
Field ion microscope

Field ion microscopy is an analytical technique used in materials science. The field ion microscope is a type of microscope that can be used to image the arrangement of atoms at the surface of a sharp metal tip....
 (FIM) to map the location of individual atoms.

Pharmacokinetics

Pharmacokinetics is often studied using mass spectrometry because of the complex nature of the matrix (often blood or urine) and the need for high sensitivity to observe low dose and long time point data. The most common instrumentation used in this application is LC-MS
Liquid chromatography-mass spectrometry

Liquid chromatography-mass spectrometry is an analytical chemistry technique that combines the physical separation capabilities of HPLC with the mass analysis capabilities of mass spectrometry....
 with a triple quadrupole mass spectrometer
Quadrupole mass analyzer

The quadrupole mass analyzer is one type of mass analyzer used in mass spectrometry. As the name implies, it consists of 4 circular rods, set perfectly parallel to each other....
. Tandem mass spectrometry is usually employed for added specificity. Standard curves and internal standards are used for quantitation of usually a single pharmaceutical in the samples. The samples represent different time points as a pharmaceutical is administered and then metabolized or cleared from the body. Blank or t=0 samples taken before administration are important in determining background and insuring data integrity with such complex sample matrices. Much attention is paid to the linearity of the standard curve; however it is not uncommon to use curve fitting
Curve fitting

Curve fitting is finding a curve which has the best fit to a series of data points and possibly other constraints. This section is an introduction to both interpolation and regression analysis....
 with more complex functions such as quadratics since the response of most mass spectrometers is less than linear across large concentration ranges.

There is currently considerable interest in the use of very high sensitivity mass spectrometry for microdosing
Microdosing

Microdosing is a technique for studying the behaviour of drugs in humans through the administration of doses so low they are unlikely to produce whole-body effects, but high enough to allow the cellular response to be studied....
 studies, which are seen as a promising alternative to animal experimentation.

Protein characterization

Mass spectrometry is an important emerging method for the characterization of proteins. The two primary methods for ionization of whole proteins are electrospray ionization
Electrospray ionization

Electrospray ionization is a technique used in mass spectrometry to produce ions. It is especially useful in producing ions from macromolecules because it overcomes the propensity of these molecules to fragment when ionized....
 (ESI) and matrix-assisted laser desorption/ionization
Matrix-assisted laser desorption/ionization

Matrix-assisted laser desorption/ionization is a soft ionization technique used in mass spectrometry, allowing the analysis of biomolecules and large organic chemistry molecules , which tend to be fragile and fragment when ionized by more conventional ionization methods....
 (MALDI). In keeping with the performance and mass range of available mass spectrometers, two approaches are used for characterizing proteins. In the first, intact proteins are ionized by either of the two techniques described above, and then introduced to a mass analyser. This approach is referred to as "top-down
Top-down proteomics

Top-down proteomics is a method of protein identification that uses an ion trapping mass spectrometer to store an isolated protein ion for mass measurement and tandem mass spectrometry analysis....
" strategy of protein analysis. In the second, proteins are enzymatically digested into smaller peptides using protease
Protease

A protease is any enzyme that conducts proteolysis, that is, begins protein catabolism by hydrolysis of the peptide bonds that link amino acids together in the polypeptide chain, which form a molecule of protein....
s such as trypsin
Trypsin

Trypsin is a serine protease found in the digestive system, where it breaks down proteins. Trypsin predominantly cleaves peptide chains at the carboxyl side of the amino acids lysine and arginine, except when either is followed by proline....
 or pepsin
Pepsin

Pepsin is an enzyme that is released by the gastric chief cells in the stomach and which degrades food proteins into peptides. Pepsin was discovered in 1836 by Theodor Schwann who also coined this enzyme's name from the Greek language word pepsis, meaning digestion ....
, either in solution
Solution

In chemistry, a solution is a homogeneous mixture composed of two or more substances. In such a mixture, a solute is dissolved in another substance, known as a solvent....
 or in gel
In-gel digestion

The in-gel digestion is part of the sample preparation for the mass spectrometry identification of proteins in course of Proteomics. The method was introduced 1992 by Rosenfeld....
 after electrophoretic
Electrophoresis

Electrophoresis is the best-known electrokinetic phenomena. It was discovered by Reuss in 1807. He observed that clay particles dispersed in water migrate under influence of an applied electric field....
 separation. Other proteolytic agents are also used. The collection of peptide products are then introduced to the mass analyser. When the characteristic pattern of peptides is used for the identification of the protein the method is called peptide mass fingerprinting
Peptide mass fingerprinting

Peptide mass fingerprinting is an analytical technique for protein identification that was developed in 1993 by several groups independently. In this method, the unknown protein of interest is first cleaved into smaller peptides, whose absolute masses can be accurately measured with a mass spectrometer such as MALDI-TOF or Electrospray....
 (PMF), if the identification is performed using the sequence data determined in tandem MS
Tandem mass spectrometry

Tandem mass spectrometry, also known as MS/MS, involves multiple steps of mass spectrometry selection, with some form of fragmentation occurring in between the stages....
 analysis it is called de novo sequencing. These procedures of protein analysis are also referred to as the "bottom-up" approach.

Space exploration

As a standard method for analysis, mass spectrometers have reached other planets and moons. Two were taken to Mars
MARS

In cryptography, MARS is a block cipher that was IBM's submission to the Advanced Encryption Standard process. MARS was selected as an AES finalist in August 1999, after the AES2 conference in March 1999, where it was voted as the fifth and last finalist algorithm....
 by the Viking program
Viking program

NASA's Viking program consisted of a pair of space probes sent to Mars , Viking 1 and Viking 2. Each vehicle was composed of two main parts, an orbiter designed to photograph the surface of Mars from orbit, and a lander designed to study the planet from the surface....
. In early 2005 the Cassini-Huygens
Cassini-Huygens

Cassini?Huygens is a joint NASA/European Space Agency robotic spacecraft mission currently studying the planet Saturn and Saturn's natural satellites....
 mission delivered a specialized GC-MS instrument aboard the Huygens probe
Huygens probe

The Huygens probe, supplied by the European Space Agency and named after the Dutch 17th century astronomer Christiaan Huygens, was an atmospheric entry probe carried to Saturn 's moon Titan as part of the Cassini-Huygens mission....
 through the atmosphere of Titan
Titan (moon)

Titan or Saturn VI is the largest natural satellite of Saturn, the only moon known to have a dense celestial body atmosphere, and the only object other than Earth for which clear evidence of stable bodies of surface liquid has been found....
, the largest moon of the planet Saturn. This instrument analyzed atmospheric samples along its descent trajectory and was able to vaporize and analyze samples of Titan's frozen, hydrocarbon covered surface once the probe had landed. These measurements compare the abundance of isotope(s) of each particle comparatively to earth's natural abundance.. Also onboard the Cassini-Huygens
Cassini-Huygens

Cassini?Huygens is a joint NASA/European Space Agency robotic spacecraft mission currently studying the planet Saturn and Saturn's natural satellites....
 spacecraft is an ion and neutral mass spectrometer which has been taking measurements of Titan's atmospheric composition as well as the composition of Enceladus
Enceladus

Enceladus can refer to:*Enceladus , one of the Gigantes in Greek mythology*Enceladus , a natural satellite of Saturn...
' plumes.

Mass spectrometers are also widely used in space missions to measure the composition of plasmas. For example, the Cassini spacecraft carries the Cassini Plasma Spectrometer (CAPS), which measures the mass of ions in Saturn's magnetosphere
Magnetosphere

A magnetosphere is a highly magnetized region around and possessed by an astronomical object. Earth is surrounded by a magnetosphere, as are the magnetized planets Mercury , Jupiter, Saturn, Uranus, and Neptune....
.

Respired gas monitor

Mass spectrometers were used in hospitals for respiratory gas analysis beginning around 1975 through the end of the century. Some are likely still in use but none are currently being manufactured.

Found mostly in the operating room, they were a part of a complex system in which respired gas samples from patients undergoing anesthesia
Anesthesia

Anesthesia, or anaesthesia , has traditionally meant the condition of having sensation blocked or temporarily taken away. This allows patients to undergo surgery and other procedures without the distress and pain they would otherwise experience....
 were drawn into the instrument through a valve mechanism designed to sequentially connect up to 32 rooms to the mass spectrometer. A computer directed all operations of the system. The data collected from the mass spectrometer was delivered to the individual rooms for the anesthesiologist to use.

This magnetic sector mass spectrometer's uniqueness may have been the fact that a plane of detectors, each purposely positioned to collect all of the ion species expected to be in the samples, allowed the instrument to simultaneously report all of the patient respired gases. Although the mass range was limited to slightly over 120 u
Atomic mass unit

The unified atomic mass unit , or dalton or, sometimes, universal mass unit, is a Units of measurement of mass used to express atomic weight and molecular masses....
, fragmentation of some of the heavier molecules negated the need for a higher detection limit.

See also

  • Mass spectrometry software
    Mass spectrometry software

    Mass spectrometry software is software used for data acquisition, analysis, or representation in mass spectrometry....
  • Electron spectrometer
    Electron spectrometer

    In an Electron spectrometer, an incoming beam of electrons is bent with electric or magnetic fields. As higher energy electrons will be bent less by the beam, this produces a spatially distributed range of energies....
  • Atom probe
    Atom probe

    The atom probe is an atomic-resolution microscope used in materials science that was invented in 1967 by Erwin Wilhelm M?ller, J. A. Panitz, and S....
  • Calutron
    Calutron

    A Calutron was a mass spectrometer used for isotope separation of uranium developed by Ernest O. Lawrence during the Manhattan Project and was similar to the Cyclotron invented by Lawrence....
  • Helium mass spectrometer
    Helium mass spectrometer

    A helium mass spectrometer is an instrument commonly used to detect and locate small leaks. It was initially developed in the Manhattan Project during World War II to find extremely small leaks in the Gaseous diffusion of enriched uranium....
  • Ion attachment mass spectrometry
  • MALDI imaging
    MALDI imaging

    MALDI imaging is the use of matrix-assisted laser desorption ionization as a mass spectrometry imaging technique in which the sample, often a thin Tissue section, is moved in two dimensions while the mass spectrum is recorded....
  • Mass spectrometry imaging
    Mass spectrometry imaging

    Mass spectrometry imaging is a technique used in mass spectrometry to visualize the spatial distribution of e.g. compounds, biomarker, metabolites, peptides or proteins by their molecular masses....
  • Desorption atmospheric pressure photoionization
    Desorption atmospheric pressure photoionization

    Desorption atmospheric pressure photoionization is an atmospheric-pressure ionization technique for mass spectrometry. DAPPI enables direct analysis of solid samples without pretreatment and analysis of samples deposited on surfaces by means of a jet of hot solvent vapour and vacuum ultraviolet light....
  • Membrane introduction mass spectrometry
    Membrane introduction mass spectrometry

    Membrane introduction mass spectrometry is a method of introducing analytes into the mass spectrometer's vacuum chamber via a semipermeable membrane artificial membrane....
  • Secondary ionisation
  • Taylor cone
    Taylor cone

    A Taylor cone refers to the cone observed in electrospinning, electrospraying and hydrodynamic spray processes from which a jet of charged particles emanates above a threshold voltage....


Manufacturers

  • Agilent Technologies
    Agilent Technologies

    Agilent Technologies , or Agilent, is a company which designs and manufactures instruments and equipment for measurement and evaluation. The company's headquarters are in Santa Clara, California, California....
  • Bruker Daltonics
    Bruker

    Bruker originally started as a German company specialized in nuclear magnetic resonance , and has evolved into a worldwide company with an extensive portfolio of products for the biological, chemical, industrial, and medical fields....
  • CovalX
    CovalX

    CovalX AG is a Z?rich, Switzerland-based company which develops and manufactures scientific instrumentation for academic research and industrial use....
  • ESS
    ESS

    The term ESS may refer to the letter S or:In policy and programs:*Economic System of Socialism, economic policy implemented in East Germany in the 1960s...
  • JEOL
    JEOL

    is a notable manufacturer of electron microscopes and other scientific instruments. Its headquarters are in Tokyo, Japan, with 25 subsidiaries and two associated companies....
  • LECO Corporation
  • MDS SCIEX / Applied Biosystems
  • PerkinElmer
    PerkinElmer

    PerkinElmer, Inc. is an American Multinational corporation technology corporation, focused in the business areas of: Life and Analytical Sciences, Optoelectronics, and Fluid Sciences....
  • Shimadzu Corporation
  • Thermo Fisher Scientific
    Thermo Fisher Scientific

    Thermo Fisher Scientific is a large life sciences supply company that was created in 2006 by the merger of Thermo Electron and Fisher Scientific....
  • Waters Corporation
    Waters Corporation

    Waters Corporation is a publicly traded laboratory analytical instrument and software company headquartered in Milford, Massachusetts. The company employs more than 5,000 people, with manufacturing facilities located in Milford, Taunton, Massachusetts; Wexford, Ireland; Manchester, England; and contract manufacturing in Singapore....
  • Varian, Inc.
    Varian, Inc.

    Varian, Inc. is one of the largest manufacturers of scientific instruments for the scientific industry; they have offerings over the whole range of chemical analysis equipment, with a particular focus on Information Rich Detection and Vacuum technology....


Bibliography

  • Muzikar, P., et al., "Accelerator Mass Spectrometry in Geologic Research", Geological Society of America Bulletin v. 115 (2003) p. 643 - 654.*


External links


  • National High Magnetic Field Laboratory
  • An interactive application simulating the console of a mass spectrometer
  • An free mass spectral database