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Soil respiration

Soil respiration

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Soil respiration refers to the production of carbon dioxide
Carbon dioxide
Carbon dioxide is a naturally occurring chemical compound composed of two oxygen atoms covalently bonded to a single carbon atom...

 when soil organisms respire. This includes respiration of plant roots, the rhizosphere
Rhizosphere
The rhizosphere is the narrow region of soil that is directly influenced by root secretions and associated soil microorganisms. Soil which is not part of the rhizosphere is known as bulk soil. The rhizosphere contains many bacteria that feed on sloughed-off plant cells, termed rhizodeposition, and...

, microbes and fauna
Fauna
Fauna or faunæ is all of the animal life of any particular region or time. The corresponding term for plants is flora.Zoologists and paleontologists use fauna to refer to a typical collection of animals found in a specific time or place, e.g. the "Sonoran Desert fauna" or the "Burgess shale fauna"...

.

Soil respiration is a key ecosystem process that releases carbon from the soil in the form of CO2. CO2 is acquired from the atmosphere and converted into organic compounds in the process of photosynthesis
Photosynthesis
Photosynthesis is a chemical process that converts carbon dioxide into organic compounds, especially sugars, using the energy from sunlight. Photosynthesis occurs in plants, algae, and many species of bacteria, but not in archaea. Photosynthetic organisms are called photoautotrophs, since they can...

. Plants use these organic compounds to build structural components or respire them to release energy. When plant respiration occurs below-ground in the roots, it adds to soil respiration. Over time, plant structural components are consumed by heterotroph
Heterotroph
A heterotroph is an organism that cannot fix carbon and uses organic carbon for growth. This contrasts with autotrophs, such as plants and algae, which can use energy from sunlight or inorganic compounds to produce organic compounds such as carbohydrates, fats, and proteins from inorganic carbon...

s. This heterotrophic consumption releases CO2 and when this CO2 is released by below-ground organisms, it is considered soil respiration.

The amount of soil respiration that occurs in an ecosystem is controlled by several factors. The temperature, moisture, nutrient content and level of oxygen in the soil can produce extremely disparate rates of respiration. These rates of respiration can be measured in a variety of methods. Other methods can be used to separate the source components, in this case the type of photosynthetic pathway (C3/C4), of the respired plant structures.

Soil respiration rates can be largely effected by human activity. This is because humans have the ability to and have been changing the various controlling factors of soil respiration for numerous years. Global climate change is composed of numerous changing factors including rising atmospheric CO2, increasing temperature and shifting precipitation patterns. All of these factors can effect the rate of global soil respiration. Increased nitrogen fertilization by humans also has the potential to effect rates over the entire Earth.

Soil respiration and its rate across ecosystems is extremely important to understand. This is because soil respiration plays a large role in global carbon cycling as well as other nutrient cycles. The respiration of plant structures releases not only CO2 but also other nutrients in those structures, such as nitrogen. Soil respiration is also associated with positive feedbacks with global climate change. Positive feedbacks are when a change in a system produces response in the same direction of the change. Therefore, soil respiration rates can be effected by climate change and then respond by enhancing climate change.

Sources of carbon dioxide in soil


All cellular respiration releases releases energy, water and CO2 from organic carbon compounds. Any respiration that occurs below-ground is considered soil respiration. Respiration by plant roots, bacteria, fungi and soil animals are all sources of 2 to 20 mm (0.078740157480315 to 0.78740157480315 in) in soil.

Tricarboxylic acid (TCA) cycle


The tricarboxylic acid (TCA) cycle – or citric acid cycle
Citric acid cycle
The citric acid cycle — also known as the tricarboxylic acid cycle , the Krebs cycle, or the Szent-Györgyi-Krebs cycle — is a series of chemical reactions which is used by all aerobic living organisms to generate energy through the oxidization of acetate derived from carbohydrates, fats and...

 – is an important step in cellular respiration. In the TCA cycle, a six carbon sugar will be oxidized. This oxidation produces the CO2 and H2O from the sugar. Plants, fungi, animals and bacteria all use this cycle to convert organic compounds to energy. This is how the majority of soil respiration occurs at its most basic level. Since the process relies on oxygen to occur, this is referred to as aerobic respiration.

Fermentation


Fermentation
Fermentation (biochemistry)
Fermentation is the process of extracting energy from the oxidation of organic compounds, such as carbohydrates, using an endogenous electron acceptor, which is usually an organic compound. In contrast, respiration is where electrons are donated to an exogenous electron acceptor, such as oxygen,...

 is another process in which cells gain energy from organic compounds. In this metabolic pathway, energy is derived from the carbon compound without the use of oxygen. The products of this reaction are carbon dioxide and usually either ethyl alcohol or lactic acid. Due to the lack of oxygen, this pathway is described as anaerobic respiration. This is an important source of CO2 in soil respiration in water logged ecosystems where oxygen is scarce, as in peat bogs and wetlands. However, most CO2 released from the soil occurs via respiration and one of the most important aspects of belowground respiration occurs in the plant roots.

Root respiration


Plants respire some of the carbon compounds which were generated by photosynthesis. When this respiration occurs in roots, it adds to soil respiration. Root respiration usually accounts for approximately half of all soil respiration. However these values can range from 10–90% depending on the dominate plant types in an ecosystem and conditions under which the plants are subjected. Thus the amount of CO2 produced through root respiration is determined by the root biomass and specific root respiration rates. Directly next to the root is the area known as the rhizosphere, which also plays an important role in soil respiration.

Rhizosphere respiration


The rhizosphere
Rhizosphere
The rhizosphere is the narrow region of soil that is directly influenced by root secretions and associated soil microorganisms. Soil which is not part of the rhizosphere is known as bulk soil. The rhizosphere contains many bacteria that feed on sloughed-off plant cells, termed rhizodeposition, and...

 is a zone immediately next to the root surface with its neighboring soil. In this zone there is a close interaction between the plant and microorganisms. Roots continuously release substances, or exudates, into the soil. These exudates include sugars, amino acids, vitamins, long chain carbohydrates, enzymes and lysates which are released when roots cells break. The amount of carbon lost as exudates varies considerably between plant species. It has been demonstrated that up to 20% of carbon acquired by photosynthesis is released into the soil as root exudates. These exudates are decomposed primarily by bacteria. These bacteria will respire the carbon compounds through the TCA cycle, however fermentation is also present. This is due to the lack of oxygen due to greater oxygen consumption by the root as compared to the bulk soil, soil at a greater distance from the root. Another important organism in the rhizosphere are root-infecting fungi or mycorrhizae. These fungi increase the surface area of the plant root and allow the root to encounter and acquire a greater amount of soil nutrients necessary for plant growth. In return for this benefit, the plant will transfer sugars to the fungi. The fungi will respire these sugars for energy thereby increasing soil respiration. Fungi, along with bacteria and soil animals, also play a large role in the decomposition of litter and soil organic matter.

Soil animals


Soil animals graze on populations of bacteria and fungi as well as ingest and break up litter to increase soil respiration. Microfauna are made up of the smallest soil animals. These include nematodes and mites. This group specializes on soil bacteria and fungi. By ingesting these organisms, carbon that was initially in plant organic compounds and was incorporated into bacterial and fungal structures will now be respired by the soil animal. Mesofauna are soil animals from 0.1 to 2 mm (0.00393700787401575 to 0.078740157480315 in) in length and will ingest soil litter. The fecal material will hold a greater amount of moisture and have a greater surface area. This will allow for new attack by microorganisms and a greater amount of soil respiration. Macrofauna are organisms from 2 to 20 mm (0.078740157480315 to 0.78740157480315 in), such as earthworms and termites. Most macrofauna fragment litter, thereby exposing a greater amount of area to microbial attack. Other macrofauna burrow or ingest litter, reducing soil bulk density, breaking up soil aggregates and increasing soil aeration and the infiltration of water.

Regulation of soil respiration


Regulation of CO2 production in soil is due to various abiotic, or non-living, factors. Temperature, soil moisture and nitrogen all contribute to the rate of respiration in soil.

Temperature


Temperature affects almost all aspects of respiration processes. Temperature will increase respiration exponentially to a maximum, at which point respiration will decrease to zero when enzymatic activity is interrupted. Root respiration increases exponentially with temperature in its low range when the respiration rate is limited mostly by the TCA cycle. At higher temperatures the transport of sugars and the products of metabolism become the limiting factor. At temperatures over 35 degrees Celsius, root respiration begins to shut down completely. Microorganisms are divided into three temperature groups; cryophiles, mesophiles and thermophiles. Cryophiles function optimally at temperatures below 20 degrees Celsius, mesophiles function best at temperatures between 20 and 40 degrees Celsius and thermophiles function optimally at over 40 degrees Celsius. In natural soils many different cohorts, or groups of microorganisms exist. These cohorts will all function best at different conditions so respiration may occur over a very broad range. Temperature increases lead to greater rates of soil respiration until high values retard microbial function, this is the same pattern that is seen with soil moisture levels.

Soil moisture


Soil moisture is another important factor influencing soil respiration. Soil respiration is low in dry conditions and increases to a maximum at intermediate moisture levels until it begins to decrease when moisture content excludes oxygen. This allows anaerobic conditions to prevail and depress aerobic microbial activity. Studies have shown that soil moisture only limits respiration at the lowest and highest conditions with a large plateau existing at intermediate soil moisture levels for most ecosystems. Many microorganisms possess strategies for growth and survival under low soil moisture conditions. Under high soil moisture conditions, many bacteria take in too much water causing their cell membrane to lyse, or break. This can decrease the rate of soil respiration temporarily, but the lysis of bacteria causes for a spike in resources for many other bacteria. This rapid increase in available labile substrates causes short term enhanced soil respiration. Root respiration will increase with increasing soil moisture, especially in dry ecosystems, however individual species root respiration response to soil moisture will vary widely from species to species depending on life history traits. Upper levels of soil moisture will depress root respiration with the exception of wetland plants, which have developed specific mechanisms for root aeration. Soil moisture levels regulate root respiration, which is essential for nitrogen uptake.

Nitrogen


Nitrogen directly affects soil respiration in several ways. Nitrogen must be taken in by roots in order to promote plant growth and life. Most available nitrogen is in the form of NO3, which costs 0.4 units of CO2 to enter the root because energy must be used to move it up a concentration gradient. Once inside the root the NO3 must be reduced to NH3. This step requires more energy, which equals 2 units of CO2 per molecule reduced. In plants with mycorrhizal symbionts, which fix atmospheric nitrogen, the energetic cost to the plant to acquire one molecule of NH3 from atmospheric N2 is 2.36 CO2. It is essential that plants uptake nitrogen from the soil or rely on symbionts to fix it from the atmosphere in order to assure growth, reproduction and long term survival.

Another way nitrogen affects soil respiration is through litter decomposition. High nitrogen litter is considered high quality and is more readily decomposed by microorganisms than low quality litter. Degradation of cellulose, a tough plant structural compound, is also a nitrogen limited process and will increase with the addition of nitrogen to litter.

Methods of measurement


Many different methods exist for the measurement of soil respiration rate and the determination of sources. The closed dynamic chamber method and the use of stable isotope ratios represent two of the most widely used techniques.

Closed dynamic chamber method


The closed dynamic chamber method involves placing a closed chamber over the soil surface. Tubes running from the top of the chamber will pass the air in the chamber through an infrared gas analyzer (IRGA), which continuously measures CO2 concentration. The air will then be pumped back into the chamber. An initial CO2 measurement is taken and subsequent measurements are taken at regular intervals over the next few minutes until a final CO2 concentration is recorded at a predetermined end time.

When these multiple data points are graphed, the points can be fitted with a linear regression equation, which will provide a slope. This slope can provide the rate of soil respiration with the equation , where F is the rate of soil respiration, b is the slope, V is the volume of the chamber and A is the surface area of the soil covered by the chamber. It is important that the measurement is not allowed to run over a longer period of time as the increase in CO2 concentration in the chamber will also increase the concentration of CO2 in the porous top layer of the soil profile. This increase in concentration will cause an underestimation of soil respiration rate due to the additional CO2 being stored within the soil.

Instruments that use this closed dynamic chamber mode of operation are the most common method researchers use to measure soil respiration today.

Isotope methods


Plants acquire CO2 and produce organic compounds with the use of one of three photosynthetic pathways. The two most prevalent pathways are the C3 and C4 processes. C3 plants are best adapted to cool and wet conditions while C4 plants do well in hot and dry ecosystems. Due to the different photosynthetic enzymes between the two pathways, different carbon isotopes are acquired preferentially. Isotopes are the same element that differ in the number of neutrons, thereby making one isotope heavier than the other. The two stable carbon isotopes are 12C and 13C. The C3 pathway will discriminate against the heavier isotope more than the C4 pathway. This will make the plant structures produced from C4 plants more enriched in the heavier isotope and therefore root exudates and litter from these plants will also be more enriched. When the carbon in these structures is respired, the CO2 will show a similar ratio of the two isotopes. Researchers will grow a C4 plant on soil that was previously occupied by a C3 plant or vice versa. By taking soil respiration measurements and analyzing the isotopic ratios of the CO2 it can be determined whether the soil respiration is mostly old versus recently formed carbon. For example, maize, a C4 plant, was grown on soil where spring wheat, a C3 plant, was previously grown. The results showed respiration of C3 SOM in the first 40 days, with a gradual linear increase in heavy isotope enrichment until day 70. The days after 70 showed a slowing enrichment to a peak at day 100. By analyzing stable carbon isotope data it is possible to determine the source components of respired SOM that was produced by different photosynthetic pathways.

Responses to human disturbance


Throughout the past 160 years, humans have changed land use and industrial practices, which have altered the climate and global geochemical cycles. These changes have affected the rate of soil respiration around the planet.

Elevated carbon dioxide


Since the Industrial Revolution, humans have been emitting vast amounts of CO2 into the atmosphere. These emissions have increased exponentially over time and have increased global atmospheric CO2 levels to their highest in over 750,000 years. Soil respiration increases when ecosystems are exposed to elevated levels of CO2. Numerous free air CO2 enrichment (FACE) studies have been conducted to test soil respiration under predicted future elevated CO2 conditions. Recent FACE studies have shown large increases in soil respiration due to increased root biomass and microbial activity. Soil respiration has been found to increase up to 40.6% in a sweetgum forest in Tennessee and poplar forests in Wisconsin under elevated CO2 conditions. It is extremely likely that CO2 levels will exceed those used in these FACE experiments by the middle of this century due to increased human use of fossil fuels and land use practices.

Climate warming


Due to the increase in CO2 in our atmosphere, the mean average temperature of the Earth is rising. This is due to the nature of CO2 as a greenhouse gas. High frequency energy moves to the Earth from the sun and turns into low frequency heat energy when it reaches Earth's surface. The high frequency energy moves through the CO2 in the atmosphere with relative ease, however low frequency radiation is trapped between the surface and the upper atmosphere by the CO2 molecules and thus cannot return to space. This gradual net gain of energy is raising the temperature of the Earth. As mentioned earlier, temperature greatly affects the rate of soil respiration. This may have the most drastic influence in the Arctic. Large stores of carbon are locked in the frozen permafrost. With an increase in temperature, this permafrost is melting and aerobic conditions are beginning to prevail, thereby greatly increasing the rate of respiration in that ecosystem.

Changes in precipitation


Due to the shifting patterns of temperature and changing oceanic conditions, precipitation patterns are expected to change in location, frequency and intensity. Larger and more frequent storms are expected when oceans can transfer more energy to the forming storm systems. This may have the greatest impact on xeric, or arid, ecosystems. It has been shown that soil respiration in arid ecosystems shows dynamic changes within a raining cycle. The rate of respiration in dry soil usually bursts to a very high level after rainfall and then gradually decreases as the soil dries. With an increase in rainfall frequency and intensity over area without previous extensive rainfall, a dramatic increase in soil respiration can be inferred.

Nitrogen fertilization


Since the onset of the Green Revolution in the middle of the last century, vast amounts of nitrogen fertilizers have been produced and introduced to almost all agricultural systems. This has led to increases in plant available nitrogen in ecosystems around the world due to agricultural runoff and wind driven fertilization. As discussed earlier, nitrogen can have a significant positive effect on the level and rate of soil respiration. Increases in soil nitrogen have been found to increase plant dark respiration, stimulate specific rates of root respiration and increase total root biomass. This is because high nitrogen rates are associated with high plant growth rates. High plant growth rates will lead to the increased respiration and biomass found in the study. With this increase in productivity, an increase in soil activities and therefore respiration can be assured.

Importance


Soil respiration plays a significant role in the global carbon and nutrient cycles as well as being a driver for changes in climate. These roles are important to our understanding of the natural world and our own well being.

Global carbon cycling


Soil respiration plays a critical role in the regulation of carbon cycling at the ecosystem and global scales. Each year approximately 120 petagrams (Pg) of carbon are taken up by land plants and a similar amount is released to the atmosphere through ecosystem respiration. The global soils contain up to 3150 Pg of carbon, of which 450 Pg exist in wetlands and 400 Pg in permanently frozen soils. The soils contain more than four times the carbon as the atmosphere. Researchers have estimated that soil respiration accounts for 77 Pg of carbon released to the atmosphere each year. This level of release is one order of magnitude greater than the carbon release due to anthropogenic sources (6 Pg per year) such as fossil fuel burning. Thus, a small change in soil respiration can seriously alter the balance of atmosphere CO2 concentration versus soil carbon stores. Much like soil respiration can play a significant role in the global carbon cycle, it can also regulate global nutrient cycling.

Nutrient cycling


A major component of soil respiration is from the decomposition of litter which releases CO2 to the environment while simultaneously immobilizing or mineralizing nutrients. During decomposition, nutrients, such as nitrogen, are immobilized by microbes for their own growth. As these microbes are ingested or die, nitrogen is added to the soil. Nitrogen is also mineralized from the degradation of proteins and nucleic acids in litter. This mineralized nitrogen is also added to the soil. Due to these processes, the rate of nitrogen added to the soil is coupled with rates of microbial respiration. Studies have shown that rates of soil respiration were associated with rates of microbial turnover and nitrogen mineralization. Alterations of the global cycles can further act to change the climate of the planet.

Climate change


As stated earlier, the CO2 released by soil respiration is a greenhouse gas that will continue to trap energy and increase the global mean temperature if concentrations continue to rise. As global temperature rises, so will the rate of soil respiration across the globe thereby leading to a higher concentration of CO2 in the atmosphere, again leading to higher global temperatures. This is an example of a positive feedback loop. It is estimated that a rise in temperature by 2 degrees Celsius will lead to an additional release of 10 Pg carbon per year to the atmosphere from soil respiration. This is a larger amount than current anthropogenic carbon emissions. There also exists a possibility that this increase in temperature will release carbon stored in permanently frozen soils, which are now melting. Climate models have suggested that this positive feedback between soil respiration and temperature will lead to a decrease in soil stored carbon by the middle of this century.

Summary


Soil respiration is a key ecosystem process that releases carbon from the soil in the form of carbon dioxide. Carbon is stored in the soil as organic matter and is respired by plants, bacteria, fungi and animals. When this respiration occurs belowground, it is considered soil respiration. Temperature, soil moisture and nitrogen all regulate the rate of this conversion from carbon in soil organic compounds to CO2. Many methods are used to measure soil respiration, however the closed dynamic chamber and utilization of stable isotope ratios are two of the most prevalent techniques. Humans have altered atmospheric CO2 levels, precipitation patterns and fertilization rates, all of which have had a significant role on soil respiration rates. The changes in these rates can alter the global carbon and nutrient cycles as well as play a significant role in climate change.

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