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Proteobacteria

 
Proteobacteria

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Proteobacteria



 
 
The Proteobacteria are a major group (phylum
Phylum

A phylum "Phylum" is adopted from the Greek phylai, the clan-based voting groups in Greek city-states. is a taxonomic rank below Kingdom and above Class ....
) of bacteria
Bacteria

The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
. They include a wide variety of pathogen
Pathogen

A pathogen , infectious agent, or germ, is a biological agent that causes disease or illness to its Host .There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination has the longest or most persistent potential for harboring...
s, such as Escherichia
Escherichia

Escherichia is a genus of Gram-negative, non-Endospore forming, Facultative anaerobic organism, rod-shaped bacteria from the family Enterobacteriaceae....
, Salmonella
Salmonella

Salmonella is a genus of rod-shaped Gram-negative enterobacteriaceae that causes typhoid fever, paratyphoid fever, and the foodborne illness salmonellosis....
, Vibrio
Vibrio

Vibrio is a genus of Gram-negative bacteria possessing a curved rod shape. Typically found in Seawater, Vibrio are Facultative anaerobic organism that test positive for oxidase and do not form spores....
, Helicobacter
Helicobacter

Helicobacter is a genus of Gram-negative bacterium possessing a characteristic helix shape. They were initially considered to be members of the Campylobacter genus, but since 1989 they have been grouped in their own genus....
, and many other notable genera. Others are free-living, and include many of the bacteria responsible for nitrogen fixation
Nitrogen fixation

Nitrogen fixation is the process by which nitrogen is taken from its relatively inert molecular form in the Earth's atmosphere and converted into nitrogen compounds ....
. The group is defined primarily in terms of ribosomal RNA
Ribosomal RNA

Ribosomal RNA is the central component of the ribosome, the protein manufacturing machinery of all living biological cell. The function of the rRNA is to provide a mechanism for decoding mRNA into amino acids and to interact with the tRNAs during Translation by providing peptidyl transferase activity....
 (rRNA) sequences, and is named for the Greek god Proteus
Proteus

In Greek mythology, Proteus is an early sea-god, one of several deities whom Homer calls the "Old Man of the Sea", whose name suggests the "first", as protogonos is the "primordial" or the "firstborn"....
 (also the name of a bacterial genus
Proteus (bacterium)

Proteus is a genus of Gram-negative Proteobacteria....
 within the Proteobacteria), who could change his shape, because of the great diversity of forms found in this group.

All Proteobacteria are Gram-negative
Gram-negative

Gram-negative bacteria are those bacteria that do not retain crystal violet dye in the Gram staining protocol. In a Gram stain test, a counterstain is added after the crystal violet, coloring all Gram-negative bacteria with a red or pink color....
, with an outer membrane
Outer membrane

The bacterial outer membrane is found in Gram-negative bacteria. Its composition is distinct from that of the cytoplasmic membrane - among other things, the outer leaflet of the membrane include a complex lipopolysaccharide whose lipid portion acts as an endotoxin - and it is linked to the cell's peptidoglycan by Braun's lipoprotein....
 mainly composed of lipopolysaccharide
Lipopolysaccharide

Lipopolysaccharides , also known as lipoglycans, are large molecules consisting of a lipid and a polysaccharide joined by a covalent bond; they are found in the outer membrane of Gram-negative bacteria, act as endotoxins and elicit strong immune responses in animals....
s.






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Encyclopedia


The Proteobacteria are a major group (phylum
Phylum

A phylum "Phylum" is adopted from the Greek phylai, the clan-based voting groups in Greek city-states. is a taxonomic rank below Kingdom and above Class ....
) of bacteria
Bacteria

The Bacteria are a large group of unicellular microorganisms. Typically a few micrometres in length, bacteria have a wide range of shapes, ranging from spheres to rods and spirals....
. They include a wide variety of pathogen
Pathogen

A pathogen , infectious agent, or germ, is a biological agent that causes disease or illness to its Host .There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination has the longest or most persistent potential for harboring...
s, such as Escherichia
Escherichia

Escherichia is a genus of Gram-negative, non-Endospore forming, Facultative anaerobic organism, rod-shaped bacteria from the family Enterobacteriaceae....
, Salmonella
Salmonella

Salmonella is a genus of rod-shaped Gram-negative enterobacteriaceae that causes typhoid fever, paratyphoid fever, and the foodborne illness salmonellosis....
, Vibrio
Vibrio

Vibrio is a genus of Gram-negative bacteria possessing a curved rod shape. Typically found in Seawater, Vibrio are Facultative anaerobic organism that test positive for oxidase and do not form spores....
, Helicobacter
Helicobacter

Helicobacter is a genus of Gram-negative bacterium possessing a characteristic helix shape. They were initially considered to be members of the Campylobacter genus, but since 1989 they have been grouped in their own genus....
, and many other notable genera. Others are free-living, and include many of the bacteria responsible for nitrogen fixation
Nitrogen fixation

Nitrogen fixation is the process by which nitrogen is taken from its relatively inert molecular form in the Earth's atmosphere and converted into nitrogen compounds ....
. The group is defined primarily in terms of ribosomal RNA
Ribosomal RNA

Ribosomal RNA is the central component of the ribosome, the protein manufacturing machinery of all living biological cell. The function of the rRNA is to provide a mechanism for decoding mRNA into amino acids and to interact with the tRNAs during Translation by providing peptidyl transferase activity....
 (rRNA) sequences, and is named for the Greek god Proteus
Proteus

In Greek mythology, Proteus is an early sea-god, one of several deities whom Homer calls the "Old Man of the Sea", whose name suggests the "first", as protogonos is the "primordial" or the "firstborn"....
 (also the name of a bacterial genus
Proteus (bacterium)

Proteus is a genus of Gram-negative Proteobacteria....
 within the Proteobacteria), who could change his shape, because of the great diversity of forms found in this group.

All Proteobacteria are Gram-negative
Gram-negative

Gram-negative bacteria are those bacteria that do not retain crystal violet dye in the Gram staining protocol. In a Gram stain test, a counterstain is added after the crystal violet, coloring all Gram-negative bacteria with a red or pink color....
, with an outer membrane
Outer membrane

The bacterial outer membrane is found in Gram-negative bacteria. Its composition is distinct from that of the cytoplasmic membrane - among other things, the outer leaflet of the membrane include a complex lipopolysaccharide whose lipid portion acts as an endotoxin - and it is linked to the cell's peptidoglycan by Braun's lipoprotein....
 mainly composed of lipopolysaccharide
Lipopolysaccharide

Lipopolysaccharides , also known as lipoglycans, are large molecules consisting of a lipid and a polysaccharide joined by a covalent bond; they are found in the outer membrane of Gram-negative bacteria, act as endotoxins and elicit strong immune responses in animals....
s. Many move about using flagella
Flagellum

A flagellum is a tail-like structure that projects from the cell body of certain prokaryotic and eukaryotic cells, and it functions in locomotion....
, but some are non-motile or rely on bacterial gliding
Bacterial gliding

Bacterial gliding is a process whereby a bacterium can move under its own power. This process does not involve the use of flagella, which is a more common means of motility in bacteria....
. The last include the myxobacteria
Myxobacteria

The myxobacteria are a group of bacterium that predominantly live in the soil. The myxobacteria have very large genomes, relative to other bacteria, e.g....
, a unique group of bacteria that can aggregate to form multicellular fruiting bodies. There is also a wide variety in the types of metabolism
Metabolism

Metabolism is the set of chemical reactions that occur in living organisms in order to maintain life. These processes allow organisms to grow and reproduce, maintain their structures, and respond to their environments....
. Most members are facultatively or obligately anaerobic
Anaerobic organism

An anaerobic organism is any organism that does not require oxygen for growth and may even die in its presence....
 and heterotrophic, but there are numerous exceptions. A variety of genera, which are not closely related to each other, convert energy from light through photosynthesis
Photosynthesis

File:Seawifs global biosphere.jpgPhotosynthesis is a metabolic pathway that converts carbon dioxide into organic compounds, especially sugars, using the energy from sunlight....
. These are called purple bacteria
Purple bacteria

Purple bacteria or purple photosynthetic bacteria are proteobacteria that are phototrophic, i.e. capable of producing energy through photosynthesis....
, referring to their mostly reddish pigmentation.

Sections/Classes


The Proteobacteria are divided into five sections, referred to by the Greek letters alpha through epsilon, again based on rRNA sequences. These are often treated as classes. Although it has been suggested previously that the Gammaproteobacteria are paraphyletic
Paraphyly

In phylogenetics, a group of organisms is said to be paraphyletic if the group contains its most recent common ancestor Common descent but does not contain all the descendants of that ancestor....
 to the Betaproteobacteria, recent molecular data suggests that this is not so. The divisions of the proteobacteria were once regarded as subclasses (e.g. a-subclass of the Proteobacteria), but are now regarded as classes (e.g. the Alphaproteobacteria) and should be styled in italics as one word.

Alphaproteobacteria

The Alphaproteobacteria comprise most phototrophic
Phototroph

Photoautotrophs or Phototroph are organisms that carry out photosynthesis to acquire energy. Energy from light, carbon dioxide and water are converted into organic materials to be used in cell functions such as biosynthesis and Cellular respiration....
 genera, but also several genera metabolising C1-compounds (e.g. Methylobacterium spp.), symbionts of plants (e.g. Rhizobium spp.) and animals, and a group of pathogens, the Rickettsiaceae
Rickettsiaceae

The Rickettsiaceae are a Family of bacterium , including most notably the genus Rickettsia....
. Moreover the precursors of the mitochondria of eukaryotic cells are thought to have originated from Rickettsia
Rickettsia

Rickettsia is a genus of Motility, Gram-negative, Endospore, highly pleomorphic Bacterium that can present as cocci , rods or thread-like ....
 spp. in this class (See endosymbiotic theory
Endosymbiotic theory

The endosymbiotic theory concerns the origins of mitochondrion and plastids , which are organelles of eukaryote cells. According to this theory, these organelles originated as separate prokaryote organisms which were taken inside the cell as endosymbionts....
.).Because of their symbiotic properties scientists often use Alphaproteobacteria of the genus Agrobacterium
Agrobacterium

Agrobacterium is a genus of Gram-negative bacteria that uses horizontal gene transfer to cause tumors in plants. Agrobacterium tumefaciens is the most commonly studied species in this genus....
 to transfer foreign DNA into plant genomes and they also have many other biotechnological properties.

Betaproteobacteria

The Betaproteobacteria consist of several groups of aerobic or facultative bacteria which are often highly versatile in their degradation capacities, but also contain chemolithotrophic genera (e.g. the ammonia-oxidising genus Nitrosomonas
Nitrosomonas

Nitrosomonas is a genus comprising of rod shaped chemoautotrophic bacteria.This rare bacteria oxidizes ammonia into nitrite as a metabolic process....
) and some phototrophs (members of the genera Rhodocyclus and Rubrivivax). Betaproteobacteria play an role in nitrogen fixation in various types of plants, oxidizing ammonium to produce nitrite- an important chemical for plant function. Many of them are found in environmental samples, such as waste water or soil. Pathogenic species within this class are the Neisseriaceae
Neisseriaceae

The Neisseriaceae are a family of Proteobacteria, given their own order. While many organisms in the family are mammalian commensals or part of the normal Flora , the genus Neisseria includes 2 important human pathogens, specifically those responsible for gonorrhea and many cases of meningitis....
 (gonorrhea
Gonorrhea

Gonorrhea is caused by the bacterium Neisseria gonorrhoeae and is a common sexually transmitted infection. In the US, its incidence is second only to Chlamydia infection....
 and meningitis
Meningitis

Meningitis is a medical condition caused by inflammation of the protective membranes covering the brain and spinal cord, known collectively as the meninges....
) and species of the genus Burkholderia
Burkholderia

Burkholderia is a genus of proteobacteria probably best-known for its pathogenic members:Burkholderia mallei, responsible for glanders, a disease that occurs mostly in horses and related animals;...
.

Gammaproteobacteria

Vibrio Cholerae
The Gammaproteobacteria comprise several medically and scientifically important groups of bacteria, such as the Enterobacteriaceae
Enterobacteriaceae

The Enterobacteriaceae are a large family of bacterium, including many of the more familiar pathogens, such as Salmonella and Escherichia coli....
, Vibrionaceae
Vibrionaceae

The Vibrionaceae are a family of Proteobacteria, given their own order. Inhabitants of fresh or salt water, several species are pathogenic, including the type species Vibrio cholerae, which is the agent responsible for cholera....
 and Pseudomonadaceae
Pseudomonadaceae

The Pseudomonadaceae is a Family of bacterium that includes the genera Azomonas, Azomonotrichon, Azorhizophilus, Azotobacter, Cellvibrio, Mesophilobacter, Pseudomonas , Rhizobacter, Rugamonas, and Serpens ....
. A number of important pathogens belongs to this class, e.g. Salmonella
Salmonella

Salmonella is a genus of rod-shaped Gram-negative enterobacteriaceae that causes typhoid fever, paratyphoid fever, and the foodborne illness salmonellosis....
 spp. (enteritis
Enteritis

In medicine, enteritis refers to inflammation of the small intestine. See also inflammation of related organs of the gastrointestinal system: gastritis , gastroenteritis , colitis , and enterocolitis ....
 and typhoid fever
Typhoid fever

Typhoid fever, also known as enteric fever, or commonly just typhoid, is an illness caused by the bacterium Salmonella typhi. Common worldwide, it is transmitted by the ingestion of food or water contaminated with feces from an infected person....
), Yersinia pestis
Yersinia pestis

Yersinia pestis is a Gram-negative bacillus bacterium belonging to the family Enterobacteriaceae. It is a facultative anaerobe that can infect humans and other animals....
 (plague), Vibrio
Vibrio

Vibrio is a genus of Gram-negative bacteria possessing a curved rod shape. Typically found in Seawater, Vibrio are Facultative anaerobic organism that test positive for oxidase and do not form spores....
 cholerae
(cholera), Pseudomonas aeruginosa
Pseudomonas aeruginosa

Pseudomonas aeruginosa is a common bacterium which can cause disease in animals and humans. It is found in soil, water, and most man-made environments throughout the world....
 (lung infections in hospitalized or cystic fibrosis
Cystic fibrosis

Cystic Fibrosis is a Genetic disorder affecting the exocrine glands of the lungs, liver, pancreas, and intestines, causing progressive disability due to multisystem failure....
 patients), and Escherichia coli
Escherichia coli

'Escherichia coli' , is a Gram negative bacterium that is commonly found in the lower gastrointestinal tract of warm-blooded animals. Most E....
 (food poisoning). Members of Chromatium
Chromatium

The Chromatium are a Photoautotrophic Gram-negative bacterium found in water, they are also called green sulfur bacteria....
 are photosynthetic and oxidize Hydrogen Sulfide instead of water producing sulfer as excrement. Some Gammaproteobacteria are methane oxidizers and many of them are in symbiosis with geothermic ocean vent dwelling animals.

Deltaproteobacteria

The Deltaproteobacteria comprise a branch of predominantly aerobic genera, the fruiting-body-forming Myxobacteria
Myxobacteria

The myxobacteria are a group of bacterium that predominantly live in the soil. The myxobacteria have very large genomes, relative to other bacteria, e.g....
 which release myxospores in unfavorable environments, and a branch of strictly anaerobic genera, which contains most of the known sulfate-
Sulfate-reducing bacteria

Sulfate-reducing bacteria comprise several groups of bacterium that use sulfate as an oxidizing agent, reducing it to sulfide. Most sulfate-reducing bacteria can also use other oxidized sulfur compounds such as sulfite and thiosulfate, or elemental sulfur....
 (Desulfovibrio, Desulfobacter, Desulfococcus, Desulfonema, etc.) and sulfur-reducing bacteria
Sulfur-reducing bacteria

Sulfur-reducing bacteria get their energy by reducing elemental sulfur to hydrogen sulfide. They couple this reaction with the oxidation of acetate, succinate or other organic compounds....
 (e.g. Desulfuromonas spp.) alongside several other anaerobic bacteria with different physiology (e.g. ferric iron-reducing Geobacter
Geobacter

Geobacter is a genus of proteobacteria. Geobacter are an anaerobic respiration bacterial species which have capabilities that may make them useful in bioremediation....
 spp. and syntrophic Pelobacter and Syntrophus spp.).

Epsilonproteobacteria

Helicobacter Pylori
The Epsilonproteobacteria consist few known genera, mainly the curved to spirilloid Wolinella spp., Helicobacter
Helicobacter

Helicobacter is a genus of Gram-negative bacterium possessing a characteristic helix shape. They were initially considered to be members of the Campylobacter genus, but since 1989 they have been grouped in their own genus....
 spp., and Campylobacter
Campylobacter

The genus Campylobacter, first discovered in 1963, describes Gram-negative, spiral, microaerophilic bacterium. Motile, with either uni- or bi-polar flagella, the organisms have a characteristic spiral/corkscrew appearance and are oxidase-positive....
 spp. Most of the known species inhabit the digestive tract of animals and serve as symbionts
Symbiosis

The term symbiosis commonly describes close and often long-term interactions between different biological species. The term was first used in 1879 by the Germany mycology Heinrich Anton de Bary, who defined it as "the living together of unlike organisms"....
 (Wolinella spp. in cows
Cattle

Cattle, colloquially referred to as cows, are domestication ungulates, a member of the subfamily Bovinae of the family Bovidae. They are raised as livestock for meat , dairy products , leather and as draft animals ....
) or pathogen
Pathogen

A pathogen , infectious agent, or germ, is a biological agent that causes disease or illness to its Host .There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination has the longest or most persistent potential for harboring...
s (Helicobacter spp. in the stomach, Campylobacter spp. in the duodenum). There have also been numerous environmental sequences of Epsilonproteobacteria recovered from hydrothermal vent
Hydrothermal vent

A hydrothermal vent is a fissure vent in a planet's surface from which Geothermal heated water issues. Hydrothermal vents are commonly found near volcano active places, areas where tectonic plates are moving apart, ocean basins, and hotspot ....
s and cold seep
Cold seep

A cold seep is an area of the ocean floor where hydrogen sulfide, methane and other hydrocarbon-rich fluid seepage occurs, often in the form of a brine pool....
 habitats.



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