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Programmed cell death



 
 
Programmed cell-death (PCD) is death of a cell
Cell (biology)

The cell is the structural and functional unit of all known Life organisms. It is the smallest unit of an organism that is classified as living, and is often called the building bricks of life....
 in any form, mediated by an intracellular program. In contrast to necrosis
Necrosis

Necrosis is the name given to premature death of cell s and living biological tissue. Necrosis is caused by external factors, such as infection, toxins, or trauma....
, which is a form of cell-death that results from acute tissue
Biological tissue

Tissue is a cellular organizational level intermediate between cells and a complete organism. Hence, a tissue is an ensemble of cells, not necessarily identical, but from the same origin, that together carry out a specific function....
 injury and provokes an inflammatory
Inflammation

Inflammation is the complex biological response of Blood vessel tissues to harmful stimuli, such as pathogens, damaged cells, or irritants. It is a protective attempt by the organism to remove the injurious stimuli as well as initiate the healing process for the tissue....
 response, PCD is carried out in a regulated process
Process

Process may refer to:Biology*Process , a projection or outgrowth of tissue from a larger body* Biological processScience and technnology*Process , a computer program or an instance of a program running concurrently with other programs...
 which generally confers advantage during an organism's life-cycle. PCD serves fundamental functions during both plant
Plant

Plants are Life organisms belonging to the Kingdom Plantae. They include familiar organisms such as trees, herbs, bushes, grasses, vines, ferns, mosses, and green algae....
 and metazoa (multicellular animal
Animal

Animals are a major group of multicellular, eukaryotic organisms of the Kingdom Animalia or Metazoa. Their body plan eventually becomes fixed as they develop, although some undergo a process of metamorphosis later on in their life....
s) tissue development.




Besides these two types of PCD, other pathways have been discovered. Called "non-apoptotic programmed cell-death" (or "caspase
Caspase

Caspases, or cysteine-aspartic acid proteases, are a family of cysteine proteases, which play essential roles in apoptosis , necrosis and inflammation....
-independent programmed cell-death" or "necrosis-like programmed cell-death") these alternative routes to death are as efficient as apoptosis and can function as either backup mechanisms or the main type of PCD.

Other forms of programmed cell death include anoikis
Anoikis

Anoikis is a form of programmed cell death which is induced by anchorage-dependent cells detaching from the surrounding extracellular matrix . Usually cells stay close to the tissue to which they belong since the communication between proximal cells as well as between cells and ECM provide essential signals for growth or survival....
, almost identical to apoptosis except in its induction; cornification
Cornification

Cornification is the process of forming an epidermal barrier in stratified squamous epithelial tissue.At cellular level cornification is characterised by...
, a form of cell death exclusive to the eyes; excitotoxicity
Excitotoxicity

Excitotoxicity is the pathological process by which neuron are damaged and killed by glutamate and similar substances. This occurs when cell surface receptor for the excitatory neurotransmitter glutamic acid such as the NMDA receptor and AMPA receptor are overactivated....
 and Wallerian degeneration
Wallerian degeneration

Wallerian degeneration is a process that results when a nerve fiber is cut or crushed, in which the part of the axon separated from the neuron's cell nucleus degenerates....
.

Plant cells undergo particular processes of PCD which are similar to autophagic cell death.






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Programmed cell-death (PCD) is death of a cell
Cell (biology)

The cell is the structural and functional unit of all known Life organisms. It is the smallest unit of an organism that is classified as living, and is often called the building bricks of life....
 in any form, mediated by an intracellular program. In contrast to necrosis
Necrosis

Necrosis is the name given to premature death of cell s and living biological tissue. Necrosis is caused by external factors, such as infection, toxins, or trauma....
, which is a form of cell-death that results from acute tissue
Biological tissue

Tissue is a cellular organizational level intermediate between cells and a complete organism. Hence, a tissue is an ensemble of cells, not necessarily identical, but from the same origin, that together carry out a specific function....
 injury and provokes an inflammatory
Inflammation

Inflammation is the complex biological response of Blood vessel tissues to harmful stimuli, such as pathogens, damaged cells, or irritants. It is a protective attempt by the organism to remove the injurious stimuli as well as initiate the healing process for the tissue....
 response, PCD is carried out in a regulated process
Process

Process may refer to:Biology*Process , a projection or outgrowth of tissue from a larger body* Biological processScience and technnology*Process , a computer program or an instance of a program running concurrently with other programs...
 which generally confers advantage during an organism's life-cycle. PCD serves fundamental functions during both plant
Plant

Plants are Life organisms belonging to the Kingdom Plantae. They include familiar organisms such as trees, herbs, bushes, grasses, vines, ferns, mosses, and green algae....
 and metazoa (multicellular animal
Animal

Animals are a major group of multicellular, eukaryotic organisms of the Kingdom Animalia or Metazoa. Their body plan eventually becomes fixed as they develop, although some undergo a process of metamorphosis later on in their life....
s) tissue development.

Types

  • Apoptosis
    Apoptosis

    Apoptosis is the process of programmed cell death that may occur in multicellular organisms. Programmed Cell death involves a series of biochemical events leading to a characteristic cell Morphology and death, in more specific terms, a series of biochemical events that lead to a variety of morphological changes, including Bleb , changes...
     or Type I cell-death


  • Autophagic or Type II cell-death( cytoplasm
    Cytoplasm

    The cytoplasm is the part of a Cell that is enclosed within the plasma membrane. In eukaryote cells the cytoplasm contains organelles, such as mitochondrion, that are filled with liquid kept separate from the rest of the cytoplasm by biological membranes....
    ic
    : characterized by the formation of large vacuoles which eat away organelles in a specific sequence prior to the nucleus
    Cell nucleus

    In cell biology, the nucleus , also sometimes referred to as the "control center", is a membrane-enclosed organelle found in all eukaryote cell ....
     being destroyed.)


Besides these two types of PCD, other pathways have been discovered. Called "non-apoptotic programmed cell-death" (or "caspase
Caspase

Caspases, or cysteine-aspartic acid proteases, are a family of cysteine proteases, which play essential roles in apoptosis , necrosis and inflammation....
-independent programmed cell-death" or "necrosis-like programmed cell-death") these alternative routes to death are as efficient as apoptosis and can function as either backup mechanisms or the main type of PCD.

Other forms of programmed cell death include anoikis
Anoikis

Anoikis is a form of programmed cell death which is induced by anchorage-dependent cells detaching from the surrounding extracellular matrix . Usually cells stay close to the tissue to which they belong since the communication between proximal cells as well as between cells and ECM provide essential signals for growth or survival....
, almost identical to apoptosis except in its induction; cornification
Cornification

Cornification is the process of forming an epidermal barrier in stratified squamous epithelial tissue.At cellular level cornification is characterised by...
, a form of cell death exclusive to the eyes; excitotoxicity
Excitotoxicity

Excitotoxicity is the pathological process by which neuron are damaged and killed by glutamate and similar substances. This occurs when cell surface receptor for the excitatory neurotransmitter glutamic acid such as the NMDA receptor and AMPA receptor are overactivated....
 and Wallerian degeneration
Wallerian degeneration

Wallerian degeneration is a process that results when a nerve fiber is cut or crushed, in which the part of the axon separated from the neuron's cell nucleus degenerates....
.

Plant cells undergo particular processes of PCD which are similar to autophagic cell death. However, some common features of PCD are highly conserved in both plants and metazoa.

History

The concept of "programmed cell-death" was used by Lockshin
Richard A. Lockshin

Richard A. Lockshin is an United States cellular biology known for his work on apoptosis. He was educated at Harvard University where, in 1959, he obtained his bachelor's degree....
 & Williams in 1964 in relation to insect
Insect

Insects are the biggest class of arthropods and the only ones with wings. They are the most diverse group of animals on the planet. They are most diverse at the equator and their diversity declines toward the poles....
 tissue development, around eight years before "apoptosis" was coined. Since then, PCD has become the more general of these two terms.

PCD has been the subject of increasing attention and research efforts. This trend has been highlighted with the award of the 2002 Nobel Prize in Physiology or Medicine
Nobel Prize in Physiology or Medicine

The Nobel Prize in Physiology or Medicine is awarded once a year by the Swedish Karolinska Institutet. It is one of the five Nobel Prizes established by the will of Alfred Nobel in 1895, awarded for outstanding contributions in Nobel Prize in Physics, Nobel Prize in Chemistry, Nobel Prize in Literature, Nobel Peace Prize, and Physiology or Medic...
 to Sydney Brenner
Sydney Brenner

Sydney Brenner, Order of the Companions of Honour Royal Society is a South African biologist and the 2002 Nobel prize in Physiology or Medicine co-laureate....
 (United Kingdom), H. Robert Horvitz
H. Robert Horvitz

H. Robert Horvitz is an United States biologist best known for his research on the nematode worm Caenorhabditis elegans. He is currently at the Massachusetts Institute of Technology where he is Professor of Biology and a member of the McGovern Institute for Brain Research....
 (US) and John E. Sulston
John E. Sulston

Sir John Edward Sulston, Royal Society is a United Kingdom biologist and the 2002 Nobel prize in Physiology or Medicine laureate....
 (UK).

Programmed cell-death in plant tissue

Programmed cell death in plants has a number of molecular similarities to animal apoptosis
Apoptosis

Apoptosis is the process of programmed cell death that may occur in multicellular organisms. Programmed Cell death involves a series of biochemical events leading to a characteristic cell Morphology and death, in more specific terms, a series of biochemical events that lead to a variety of morphological changes, including Bleb , changes...
, but it also has differences, mostly obviously the presence of a cell wall
Cell wall

A cell wall is a tough, flexible and sometimes fairly rigid layer that surrounds some types of cell . It is located outside the cell membrane and provides these cells with structural support and protection, and also acts as a filtering mechanism....
 and the lack of an immune system
Immune system

An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
 which removes the pieces of the dead cell. Instead of an immune response, the dying cell synthesizes substances to break itself down and places them in a vacuole
Vacuole

A vacuole is a membrane organelle which is present in all eukaryotic cells. Vacuoles are essentially enclosed compartments which are filled with fluid such as water or various enzymes, though in certain cases they may contain solids which have been engulfed....
 which ruptures as the cell dies.

In "APL regulates vascular tissue identity in Arabidopsis
Arabidopsis

Arabidopsis is a genus in the family Brassicaceae. They are small flowering plants related to cabbage and Mustard plant. This genus is of great interest since it contains thale cress , one of the model organisms used for studying plant biology and the first plant to have its entire genome sequenced....
", Bonke and colleagues state that one of the two long-distance transport systems in vascular plants, xylem
Xylem

In vascular plants, xylem is one of the two types of transport tissue, phloem being the other. The word "xylem" is derived from classical Greek language ????? , "wood", and indeed the best known xylem tissue is wood, though it is found throughout the plant....
, consists of several cell-types "the differentiation of which involves deposition of elaborate cell-wall
Cell wall

A cell wall is a tough, flexible and sometimes fairly rigid layer that surrounds some types of cell . It is located outside the cell membrane and provides these cells with structural support and protection, and also acts as a filtering mechanism....
 thickenings and programmed cell-death." The authors emphasize that the products of plant PCD play an important structural role.

Basic morphological and biochemical features of PCD have been conserved in both plant and animal kingdoms
Kingdom (biology)

In Biology taxonomy, kingdom or regnum is a taxonomic rank in either the highest rank, or the Rank below domain . Each kingdom is divided into smaller groups called Phylum ....
. It should be noted, however, that specific types of plant cells carry out unique cell-death programs. These have common features with animal apoptosis -- for instance, nuclear DNA
Nuclear DNA

Nuclear DNA, nuclear deoxyribonucleic acid , is DNA contained within a cell nucleus of eukaryote. In most cases it encodes more of the genome than the mitochondrial DNA and is passed sexually rather than matrilineally....
 degradation -- but they also have their own peculiarities, such as nuclear
Cell nucleus

In cell biology, the nucleus , also sometimes referred to as the "control center", is a membrane-enclosed organelle found in all eukaryote cell ....
 degradation being triggered by the collapse of the vacuole
Vacuole

A vacuole is a membrane organelle which is present in all eukaryotic cells. Vacuoles are essentially enclosed compartments which are filled with fluid such as water or various enzymes, though in certain cases they may contain solids which have been engulfed....
 in tracheary
Tracheid

Tracheids are elongated cell s in the xylem of vascular plants, serving in the transport of water and mineral salts. The build of tracheids will vary according to where they occur....
 elements of the xylem.

Janneke Balk and Christopher J. Leaver, of the Department of Plant Sciences, University of Oxford
University of Oxford

The University of Oxford , located in the city of Oxford, Oxfordshire, England, is the List of oldest universities in continuous operation in the English-speaking world....
, carried out research on mutation
Mutation

In biology, mutations are changes to the nucleotide sequence of the genetic material of an organism. Mutations can be caused by copying errors in the genetic material during cell division, by exposure to ultraviolet or ionizing radiation, chemical mutagens, or virus , or can be induced by the organism, itself, by cellular processes such as s...
s in the mitochondrial genome
Mitochondrial genome

The mitochondrial genome is the genetic material of the mitochondria. The mitochondria are organelles that reproduce themselves semi-autonomously within eukaryote cells....
 of sun-flower
Sunflower

The sunflower is an annual plant in the family Asteraceae and native to the Americas, with a large flowering head . The stem can grow as high as 3 meters , and the flower head can reach 30 cm in diameter with the "large" seeds....
 cells. Results of this research suggest that mitochondria play the same key role in vascular plant PCD as in other eukaryotic
Eukaryote

Animals, plants, fungus, and protists are eukaryotes , organisms whose Cell are organized into complex structures enclosed within Cell membrane....
 cells.

PCD in pollen prevents inbreeding

During pollination
Pollination

Pollination in flowering plants and gymnosperms is the process that transfers pollen, which contain the male gametes to where the female gamete are contained within the carpel; in gymnosperms the pollen is directly applied to the ovule itself....
, plants enforce self-incompatibility
Self-incompatibility in plants

Self-incompatibility is a general name for several genetic mechanisms in angiosperms, which prevent self-fertilization and thus encourage outcrossing....
 (SI) as an important means to prevent self-fertilization
Biological reproduction

Reproduction is the biological process by which new individual organisms are produced. Reproduction is a fundamental feature of all known life; each individual organism exists as the result of reproduction....
. Research on the corn poppy
Corn poppy

Papaver rhoeas is a species of flowering plant in the family Papaveraceae. It has a variety of common names, including the Corn Poppy, Field Poppy, Flanders Poppy, or Red Poppy, one of the many species and genera named poppy....
 (Papaver rhoeas) has revealed that protein
Protein

Proteins are organic compounds made of amino acids arranged in a linear chain and joined together by peptide bonds between the carboxyl and amino groups of adjacent amino acid Residue ....
s in the pistil on which the pollen
Pollen

Pollen is a fine to coarse powder consisting of Gametophyte , which produce the male gametes of spermatophyta. A hard coat covering the pollen grain protects the sperm cells during the process of their movement between the stamens of the flower to the pistil of the next flower....
 lands, interact with pollen and trigger PCD in incompatible (ie. self) pollen. The researchers, Steven G. Thomas and Veronica E. Franklin-Tong, also found that the response involves rapid inhibition of pollen-tube
Pollen tube

The pollen tube of most seed plants acts as a conduit to transport sperm cells from the pollen grain, either from the stigma to the ovules at the base of the pistil, or directly through ovule tissue in some gymnosperms ....
 growth, followed by PCD.

Programmed cell death in slime molds

The social slime mold
Slime mould

Slime mold is a broad term describing fungi amoeboid organisms. Their common name refers to part of some of these organism's life cycles where they can appear gelatinous ....
 Dictyostelium discoideum
Dictyostelid

The dictyostelids are a group of cellular slime molds, or social amoebae. When food, normally bacteria, is readily available they are individual amoebae, which feed and divide normally....
 has the peculiarity of adopting either a predatory amoeba
Amoeba

Amoeba is a term used either to describe protists that move by crawling via pseudopods, or to refer to a genus that includes species that move by this mechanism....
-like behavior in its unicellular
Microorganism

A microorganism or microbe is an organism that is microscopic . The study of microorganisms is called microbiology, a subject that began with Anton van Leeuwenhoek's discovery of microorganisms in 1675, using a microscope of his own design....
 form, or coalescing into a mobile slug
Slug

Slug is a common non-scientific word, which is often applied to any gastropod Mollusca whatsoever that has a very reduced shell, a small internal shell, or no shell at all....
-like form when dispersing the spore
Spore

In biology, a spore is a reproduction structure that is adapted for biological dispersal and surviving for extended periods of time in unfavorable conditions....
s which will give birth to the next generation
Generation

Generation , also known as reproduction, is the act of producing offspring. In a more generic sense, it can also refer to the act of creating something inanimate such as electricity generation or cryptography code generation....
.

The stalk is composed of dead cells which have undergone a type of PCD that shares many features of an autophagic cell-death: massive vacuoles forming inside cells, a degree of chromatin
Chromatin

Chromatin is the complex combination of DNA, RNA, and protein that makes up chromosomes. It is found inside the cell nucleus of Eukaryote cell , and within the nucleoid in prokaryotic cells....
 condensation, but no DNA-fragmentation
Restriction digest

A restriction digest is a procedure used in molecular biology to prepare Deoxyribonucleic acid for analysis or other processing. It is also known as DNA fragmentation ....
. The structural role of the residues left by the dead cells is reminiscent of the products of PCD in plant tissue.

D. discoideum is a slime mold, part of a branch which may have emerged from eukaryotic
Eukaryote

Animals, plants, fungus, and protists are eukaryotes , organisms whose Cell are organized into complex structures enclosed within Cell membrane....
 ancestors about a billion years
Timeline of evolution

This timeline of the evolution of life outlines the major events in the development of life on the planet Earth . For a thorough explanatory context, see the history of Earth, and geologic time scale....
 before the present. They apparently emerged after the ancestors of green-plants
Viridiplantae

Viridiplantae are a clade comprising the green algae and embryophyte plants.In some classification systems they have been treated as a kingdom , under various names, e.g....
 and the ancestors of fungi and animals had differentiated. But in addition to their place in the evolutionary tree
Phylogenetic tree

A phylogenetic tree or evolutionary tree is a tree showing the evolutionary relationships among various biological species or other entities that are believed to have a common descent....
, the fact that PCD has been observed in the humble, simple, six-chromosome
Chromosome

A chromosome is an organized structure of DNA and protein that is found in Cell . A chromosome is a single piece of DNA that contains many genes, regulatory sequence and other genetic sequence....
 D. discoideum has additional significance: it permits the study of a developmental PCD path which does not depend on the caspases which are characteristic of apoptosis.

Evolutionary origin of PCD

Biologists had long suspected that mitochondria originated from bacteria which had been incorporated as endosymbionts ("living together inside") of larger eukaryotic cells. It was Lynn Margulis
Lynn Margulis

Lynn Margulis is an United States biologist and University Professor in the Earth science at the University of Massachusetts Amherst. She is best known for her theory on the origin of eukaryote organelles, and her contributions to the endosymbiotic theory?which is now generally accepted for how certain Mitochondrion were formed....
 who from 1967 on championed this theory
Theory

For a more detailed account of theories as expressed in formal language as they are studied in mathematical logic see Theory A theory, in the general sense of the word, is an analytic structure designed to explain a set of observations....
, which has since become widely accepted. The most convincing evidence
Evidence

Evidence in its broadest sense includes everything that is used to determine or demonstrate the truth of an assertion. Giving or procuring evidence is the process of using those things that are either a) presumed to be true, or b) were themselves proven via evidence, to demonstrate an assertion's truth....
 for this theory is the fact that mitochondria possess their own DNA
DNA

Deoxyribonucleic acid is a nucleic acid that contains the genetics instructions used in the development and functioning of all known living organisms and some viruses....
 and are equipped with genes
Gênes

G?nes is the name of a d?partement in France of the First French Empire in present Italy. It was named after the city Genoa. It was formed in 1805, when Napoleon Bonaparte occupied the Republic of Genoa....
 and replication
DNA replication

DNA replication, the basis for heredity, is a fundamental process occurring in all living organisms to copy their DNA. This process is "semiconservative replication" in that each strand of the original double-stranded DNA molecule serves as template for the reproduction of the complementary strand....
 apparatus.

This evolution
Evolution

In biology, evolution is change in the heritability trait of a population of organisms from one generation to the next. These changes are caused by a combination of three main processes: variation, reproduction, and selection....
ary step would have been more than risky for the primitive eukaryotic cells which began to engulf the energy-producing
Electron transport chain

An electron transport chain couples a chemical reaction between an electron donor and an electron acceptor to the transfer of proton across a Cell membrane, through a set of mediating biochemical reactions....
 bacteria and conversely, a perilous step for the ancestors of mitochondria which began to invade their proto-eukaryotic hosts
Host (biology)

In biology, a host is an organism that harbors a virus or parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter....
. This process is still evident today, between human
Human

A human being, also human or man, is a member of a species of bipedalism primates in the family Hominidae . Mitochondrial DNA evidence indicates that modern humans originated in east Africa about 200,000 years ago....
 white blood-cells
White blood cell

White blood cells , or leukocytes , are cell of the immune system defending the body against both infectious disease and foreign materials....
 and bacteria. Most of the time, invading bacteria are destroyed by the white blood-cells; however, it is not uncommon for the chemical warfare
Chemical warfare

Chemical warfare involves using the poison of chemical substances as weapons to kill, injure, or incapacitate an Enemy .This type of warfare is distinct from the use of conventional weapons or nuclear weapons because the destructive effects of chemical weapons are not primarily due to their explosion force....
 waged by prokaryote
Prokaryote

The prokaryotes are a group of organisms that lack a cell nucleus , or any other cell membrane-bound organelles. They differ from the eukaryotes, which have a cell nucleus....
s to succeed, with the consequence known as infection
Infection

An infection is the detrimental colonization of a host organism by a foreign species. In an infection, the infecting organism seeks to utilize the host resources to multiply ....
 by its resulting damage.

One of these rare evolutionary events, about two billion years
Timeline of evolution

This timeline of the evolution of life outlines the major events in the development of life on the planet Earth . For a thorough explanatory context, see the history of Earth, and geologic time scale....
 before the present, made it possible for certain eukaryotes and energy-producing prokaryotes not only to coexist, but to mutually benefit from their symbiosis
Symbiosis

The term symbiosis commonly describes close and often long-term interactions between different biological species. The term was first used in 1879 by the Germany mycology Heinrich Anton de Bary, who defined it as "the living together of unlike organisms"....
.

Mitochondriate eukaryotic cells live poised between life
Life

Life is a characteristic of organisms that exhibit certain biological processes such as chemical reactions or other events that results in a transformation....
 and death, because mitochondria still retain their repertoire of molecule
Molecule

In chemistry, a molecule is defined as a sufficiently stable, electric charge neutral group of at least two atoms in a definite arrangement held together by very strong chemical bonds....
s which can trigger cell suicide. This process has now been evolved to happen only when programmed. Given certain signals
Cell signaling

Cell signaling is part of a complex system of communication that governs basic cellular activities and coordinates cell actions. The ability of cells to perceive and correctly respond to their microenvironment is the basis of development, tissue repair, and immunity as well as normal tissue homeostasis....
 to cells (such as feedback from neighbors, stress or DNA-damage
DNA repair

DNA repair refers to a collection of processes by which a cell identifies and corrects damage to the DNA molecules that encode its genome. In human cells, both normal metabolism activities and environmental factors such as UV light and Radiation can cause DNA damage, resulting in as many as 1 million individual molecular lesions per cell pe...
), mitochondria release caspase
Caspase

Caspases, or cysteine-aspartic acid proteases, are a family of cysteine proteases, which play essential roles in apoptosis , necrosis and inflammation....
 activators which trigger the cell-death inducing biochemical
Biochemistry

Biochemistry is the study of the chemistry processes in living organisms. It deals with the structure and function of cellular components such as proteins, carbohydrates, lipids, nucleic acids and other biomolecules....
 cascade. As such, the cell-suicide mechanism
Reaction mechanism

In chemistry, a reaction mechanism is the step by step sequence of elementary reactions by which overall chemical change occurs .Although only the net chemical change is directly observation for most chemical reactions, experiments can often be designed that suggest the possible sequence of steps in a reaction mechanism....
 is now crucial to all of our lives.

Programmed death of entire organisms


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See also