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H5N1

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H5N1



 
 
Influenza A virus subtype H5N1, also known as "bird flu," A(H5N1) or simply H5N1, is a subtype of the Influenza A virus
Influenzavirus A

Influenzavirus A is a genus of the Orthomyxoviridae family of viruses. Influenzavirus A includes only one species: Influenza A virus which causes influenza in birds and some mammals....
 which can cause illness in humans and many other animal species. A bird-adapted strain of H5N1, called HPAI A(H5N1) for "highly pathogen
Pathogen

A pathogen , infectious agent, or germ, is a biological agent that causes disease or illness to its Host .There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination has the longest or most persistent potential for harboring...
ic avian influenza virus of type A of subtype H5N1", is the causative agent of H5N1 flu
Transmission and infection of H5N1

Transmission and infection of H5N1 from infected avian sources to humans is a concern due to the global spread of H5N1 that constitutes a pandemic threat....
, commonly known as "avian influenza" or "bird flu". It is enzootic in many bird populations, especially in Southeast Asia
Southeast Asia

Southeast Asia or Southeastern Asia is a subregion of Asia, consisting of the countries that are geographically south of China, east of India and north of Australia....
.






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Encyclopedia


Influenza A virus subtype H5N1, also known as "bird flu," A(H5N1) or simply H5N1, is a subtype of the Influenza A virus
Influenzavirus A

Influenzavirus A is a genus of the Orthomyxoviridae family of viruses. Influenzavirus A includes only one species: Influenza A virus which causes influenza in birds and some mammals....
 which can cause illness in humans and many other animal species. A bird-adapted strain of H5N1, called HPAI A(H5N1) for "highly pathogen
Pathogen

A pathogen , infectious agent, or germ, is a biological agent that causes disease or illness to its Host .There are several substrates and pathways whereby pathogens can invade a host; the principal pathways have different episodic time frames, but soil contamination has the longest or most persistent potential for harboring...
ic avian influenza virus of type A of subtype H5N1", is the causative agent of H5N1 flu
Transmission and infection of H5N1

Transmission and infection of H5N1 from infected avian sources to humans is a concern due to the global spread of H5N1 that constitutes a pandemic threat....
, commonly known as "avian influenza" or "bird flu". It is enzootic in many bird populations, especially in Southeast Asia
Southeast Asia

Southeast Asia or Southeastern Asia is a subregion of Asia, consisting of the countries that are geographically south of China, east of India and north of Australia....
. One strain of HPAI A(H5N1) is spreading globally
Global spread of H5N1

The global spread of highly pathogenic H5N1 in birds is considered a significant Influenza pandemic threat.While other H5N1 strains are known, they are significantly different from a current, highly pathogenic H5N1 strain on a genetic level, making the global spread of this new strain unprecedented....
 after first appearing in Asia. It is epizootic
Epizootic

In epizoology, an epizootic is a disease that appears as new cases in a given animal population, during a given period, at a rate that substantially exceeds what is "expected" based on recent experience ....
 (an epidemic in nonhumans) and panzootic (affecting animals of many species, especially over a wide area), killing tens of millions of birds and spurring the culling
Culling

Culling is the 'selection' of surplus animals from an animal population. In a wild population the selection is often done by killing the animal immediately....
 of hundreds of millions of others to stem its spread. Most references to "bird flu" and H5N1 in the popular media refer to this strain. This was reprinted in 2005:



According to the FAO Avian Influenza Disease Emergency Situation Update, H5N1 pathogenicity
Pathogenicity

Pathogenicity is the ability of an organism, a pathogen, to produce an infectious disease in another organism.It is often used interchangeably with the term "virulence", although some authors prefer to reserve the latter term for descriptions of the relative degree of damage done by a pathogen....
 is continuing to gradually rise in wild birds in endemic areas but the avian influenza disease situation in farmed birds is being held in check by vaccination. Eleven outbreaks of H5N1 were reported worldwide in June 2008 in five countries (China, Egypt, Indonesia, Pakistan and Vietnam) compared to 65 outbreaks in June 2006 and 55 in June 2007. The "global HPAI situation can be said to have improved markedly in the first half of 2008 [but] cases of HPAI are still underestimated and underreported in many countries because of limitations in country disease surveillance systems".

Overview

HPAI A(H5N1) is an avian disease. There is some evidence of limited human-to-human transmission of the virus. A risk factor for contracting the virus is handling of infected poultry, but transmission of the virus from infected birds to humans is inefficient. Still, around 60% of humans known to have been infected with the current Asian strain of HPAI A(H5N1) have died from it, and H5N1 may mutate
Mutation

In biology, mutations are changes to the nucleotide sequence of the genetic material of an organism. Mutations can be caused by copying errors in the genetic material during cell division, by exposure to ultraviolet or ionizing radiation, chemical mutagens, or virus , or can be induced by the organism, itself, by cellular processes such as s...
 or reassort
Reassortment

Reassortment is the mixing of the genetics of two similar viruses that are infecting the same cell. In particular, reassortment occurs among influenza viruses, whose genomes consist of 8 distinct segments of RNA....
 into a strain capable of efficient human-to-human transmission. In 2003, world-renowned virologist Robert Webster
Robert Webster

For the New South Wales parliamentarian see Robert James Webster'For the two-time Olympic gold medalist in diving, see Bob WebsterRobert G....
 published an article titled "The world is teetering on the edge of a pandemic that could kill a large fraction of the human population" in American Scientist
American Scientist

American Scientist is an illustrated bimonthly magazine about science and technology. Each issue includes four to five feature articles written by prominent scientists and engineers....
. He called for adequate resources to fight what he sees as a major world threat to possibly billions of lives. On September 29, 2005, David Nabarro
David Nabarro

Dr. David Nabarro , works as the Senior UN System Coordinator for Avian and Human Influenza at United Nations Headquarters in New York. He has been seconded to this position from the World Health Organization....
, the newly-appointed Senior United Nations System Coordinator for Avian and Human Influenza, warned the world that an outbreak of avian influenza could kill anywhere between 5 million and 150 million people. Experts have identified key events (creating new clade
Clade

A clade is a term used in modern alpha taxonomy, the scientific classification of living and fossil organisms, to describe a monophyletic group, defined as a group consisting of a single common ancestor and all its descendants.The term "monophyletic group" is used in this article in the conventional sense of "an a...
s, infecting new species, spreading to new areas) marking the progression of an avian flu virus towards becoming pandemic, and many of those key events have occurred more rapidly than expected.

Due to the high lethality and virulence
Virulence

Virulence refers to the degree of pathogenicity of an organism, or in other words the relative ability of a pathogen to cause disease.The word virulent, which is the adjective for virulence, derives from the Latin word virulentus, which means "full of poison." From an ecology point of view, virulence can be defined as the host's p...
 of HPAI A(H5N1), its endemic presence, its increasingly large host
Host (biology)

In biology, a host is an organism that harbors a virus or parasite, or a mutual or commensal symbiont, typically providing nourishment and shelter....
 reservoir, and its significant ongoing mutations, the H5N1 virus is the world's largest current pandemic threat, and billions of dollars are being spent researching H5N1 and preparing for a potential influenza pandemic
Influenza pandemic

An influenza pandemic is an epidemic of an influenza virus that spreads on a worldwide scale and infects a large proportion of the human population....
. At least 12 companies and 17 governments are developing pre-pandemic influenza vaccines in 28 different clinical trials that, if successful, could turn a deadly pandemic infection into a nondeadly one. Full-scale production of a vaccine that could prevent any illness at all from the strain would require at least three months after the virus's emergence to begin, but it is hoped that vaccine production could increase until one billion doses were produced by one year after the initial identification of the virus.

H5N1 may cause more than one influenza pandemic
Influenza pandemic

An influenza pandemic is an epidemic of an influenza virus that spreads on a worldwide scale and infects a large proportion of the human population....
 as it is expected to continue mutating in birds regardless of whether humans develop herd immunity
Herd immunity

Herd immunity describes a type of immunity that occurs when the vaccination of a portion of the population provides protection to unprotected individuals....
 to a future pandemic strain. Influenza pandemics from its genetic offspring may include influenza A virus
Influenzavirus A

Influenzavirus A is a genus of the Orthomyxoviridae family of viruses. Influenzavirus A includes only one species: Influenza A virus which causes influenza in birds and some mammals....
 subtypes other than H5N1. While genetic analysis of the H5N1 virus shows that influenza pandemics from its genetic offspring can easily be far more lethal than the Spanish Flu
Spanish flu

The 1918 flu pandemic was an influenza pandemic that spread to nearly every part of the world. It was caused by an unusually severe and deadly Influenza A virus Strain of subtype H1N1....
 pandemic, planning for a future influenza pandemic is based on what can be done and there is no higher Pandemic Severity Index
Pandemic Severity Index

The Pandemic Severity Index is a proposed classification scale for reporting the severity of influenza pandemics in the United States. The PSI was accompanied by a set of guidelines intended to help communicate appropriate actions for communities to follow in potential pandemic situations....
 level than a Category 5 pandemic which, roughly speaking, is any pandemic as bad as the Spanish flu
Spanish flu

The 1918 flu pandemic was an influenza pandemic that spread to nearly every part of the world. It was caused by an unusually severe and deadly Influenza A virus Strain of subtype H1N1....
 or worse; and for which all intervention measures are to be used.

Genetics

Hemagglutinin Molecule
The first known strain of HPAI A(H5N1) (called A/chicken/Scotland/59) killed two flocks of chickens in Scotland in 1959; but that strain was very different from the current highly pathogenic strain of H5N1. The dominant strain of HPAI A(H5N1) in 2004 evolved
Evolution

In biology, evolution is change in the heritability trait of a population of organisms from one generation to the next. These changes are caused by a combination of three main processes: variation, reproduction, and selection....
 from 1999 to 2002 creating the Z genotype. It has also been called "Asian lineage HPAI A(H5N1)".

Asian lineage HPAI A(H5N1) is divided into two antigen
Antigen

An antigen is a substance that prompts the generation of antibodies and can cause an immune response. The word originated from the notion that they can stimulate antibody generation....
ic clades. "Clade 1 includes human and bird isolates from Vietnam
Vietnam

Vietnam , officially the Socialist Republic of Vietnam , is the easternmost country on the Indochina Peninsula in Southeast Asia. It is bordered by People's Republic of China to the north, Laos to the northwest, Cambodia to the southwest, and the South China Sea to the east....
, Thailand
Thailand

The Kingdom of Thailand is an independent country that lies in the heart of Southeast Asia. It is bordered to the north by Laos and Myanmar, to the east by Laos and Cambodia, to the south by the Gulf of Thailand and Malaysia, and to the west by the Andaman Sea and Myanmar....
, and Cambodia
Cambodia

The Kingdom of Cambodia is a country in South East Asia with a population of over 13 million people. The kingdom's capital and largest city is Phnom Penh....
 and bird isolates from Laos
Laos

Laos , officially the Lao People's Democratic Republic, is a landlocked country in southeast Asia, bordered by Burma and People's Republic of China to the northwest, Vietnam to the east, Cambodia to the south, and Thailand to the west....
 and Malaysia
Malaysia

Malaysia is a federation that consists of States of Malaysia in Southeast Asia with a total landmass of . The capital city is Kuala Lumpur, while Putrajaya is the seat of the federal government....
. Clade 2 viruses were first identified in bird isolates from China
China

China is a Culture of China, an ancient civilization, and, depending on perspective, a national or multinational entity extending over a large area in East Asia....
, Indonesia
Indonesia

The Republic of Indonesia , is a transcontinental country in Southeast Asia and Oceania. Comprising Islands of Indonesia, it is the world's largest Archipelago state....
, Japan
Japan

Japan is an island country in East Asia. Located in the Pacific Ocean, it lies to the east of the Sea of Japan, People's Republic of China, North Korea, South Korea and Russia, stretching from the Sea of Okhotsk in the north to the East China Sea and Taiwan in the south....
, and South Korea
South Korea

South Korea, officially the Republic of Korea , ), often referred to as Korea and the "names of Korea#Revival of the names", is a Semi-presidential system republic in East Asia, located in the southern half of the Korean Peninsula....
 before spreading westward to the Middle East
Middle East

File:GreaterMiddleEast1.pngThe Middle East is a region that spans southwestern Asia, western Asia, and northeastern Africa. It has no clear boundaries, often used as a synonym to Near East, in opposition to Far East....
, Europe
Europe

Europe is, conventionally, one of the world's seven continents. Comprising the westernmost peninsula of Eurasia, Europe is generally divided from Asia to its east by the water divide of the Ural Mountains, the Ural , the Caspian Sea, and by the Caucasus Mountains to the southeast....
, and Africa
Africa

Africa is the world's second-largest and second most-populous continent, after Asia. At about 30.2 million km? including adjacent islands, it covers 6% of the Earth's total surface area and 20.4% of the total land area....
. The clade 2 viruses have been primarily responsible for human H5N1 infections that have occurred during late 2005 and 2006, according to WHO. Genetic analysis has identified six subclades of clade 2, three of which have a distinct geographic distribution and have been implicated in human infections:
  • Subclade 1, Indonesia
  • Subclade 2, Europe, Middle East, and Africa (called EMA)
  • Subclade 3, China"


A 2007 study focused on the EMA subclade has shed further light on the EMA mutations. "The 36 new isolates reported here greatly expand the amount of whole-genome sequence data available from recent avian influenza (H5N1) isolates. Before our project, GenBank contained only 5 other complete genomes from Europe for the 2004–2006 period, and it contained no whole genomes from the Middle East or northern Africa. Our analysis showed several new findings. First, all European, Middle Eastern, and African samples fall into a clade that is distinct from other contemporary Asian clades, all of which share common ancestry with the original 1997 Hong Kong strain. Phylogenetic trees built on each of the 8 segments show a consistent picture of 3 lineages, as illustrated by the HA tree shown in Figure 1. Two of the clades contain exclusively Vietnamese isolates; the smaller of these, with 5 isolates, we label V1; the larger clade, with 9 isolates, is V2. The remaining 22 isolates all fall into a third, clearly distinct clade, labeled EMA, which comprises samples from Europe, the Middle East, and Africa. Trees for the other 7 segments display a similar topology, with clades V1, V2, and EMA clearly separated in each case. Analyses of all available complete influenza (H5N1) genomes and of 589 HA sequences placed the EMA clade as distinct from the major clades circulating in People's Republic of China, Indonesia, and Southeast Asia."

Terminology

H5N1 isolates are identified like this actual HPAI A(H5N1) example, A/chicken/Nakorn-Patom/Thailand/CU-K2/04(H5N1):
  • A stands for the species of influenza (A
    Influenzavirus A

    Influenzavirus A is a genus of the Orthomyxoviridae family of viruses. Influenzavirus A includes only one species: Influenza A virus which causes influenza in birds and some mammals....
    , B
    Influenzavirus B

    Influenzavirus B is a genus in the virus family Orthomyxoviridae. The only species in this genus is called "Influenza B virus".Influenza B viruses are only known to infect humans and Pinnipeds, giving them influenza....
     or C
    Influenzavirus C

    Influenzavirus C is a genus in the virus family Orthomyxoviridae, which includes those viruses which cause influenza. The only species in this genus is called "Influenza C virus"....
    ).
  • chicken is the species the isolate was found in
  • Nakorn-Patom/Thailand is the place this specific virus was isolated
  • CU-K2 identifies it from other influenza viruses isolated at the same place
  • 04 represents the year 2004
  • H5 stands for the fifth of several known types of the protein hemagglutinin
    Hemagglutinin

    Influenza hemagglutinin or haemagglutinin is a type of hemagglutinin found on the surface of the influenza viruses. It is an antigenic glycoprotein....
    .
  • N1 stands for the first of several known types of the protein neuraminidase
    Neuraminidase

    Neuraminidase enzymes are glycoside hydrolase enzymes which cleave the glycosidic linkages of neuraminic acid. Neuraminidase enzymes are a large family, found in a range of organisms....
    .
(Other examples: A/duck/Hong Kong/308/78(H5N3), A/avian/NY/01(H5N2), A/chicken/Mexico/31381-3/94(H5N2), and A/shoveler
Shoveler

The shovelers, formerly known as shovellers, are four species of dabbling ducks with long, broad spatula-shaped beaks:* Red Shoveler, Anas platalea...
/Egypt/03(H5N2)).

As with other avian flu viruses, H5N1 has strains called "highly pathogenic" (HP) and "low-pathogenic" (LP). Avian influenza viruses that cause HPAI are highly virulent
Virulence

Virulence refers to the degree of pathogenicity of an organism, or in other words the relative ability of a pathogen to cause disease.The word virulent, which is the adjective for virulence, derives from the Latin word virulentus, which means "full of poison." From an ecology point of view, virulence can be defined as the host's p...
, and mortality rates in infected flocks often approach 100%. LPAI viruses have negligible virulence, but these viruses can serve as progenitors to HPAI viruses. The current strain of H5N1 responsible for the deaths of birds across the world is an HPAI strain; all other current strains of H5N1, including a North American strain that causes no disease at all in any species, are LPAI strains. All HPAI strains identified to date have involved H5 and H7 subtypes. The distinction concerns pathogenicity in poultry, not humans. Normally a highly pathogenic avian virus is not highly pathogenic to either humans or non-poultry birds. This current deadly strain of H5N1 is unusual in being deadly to so many species, including some, like domestic cats, never previously susceptible to any influenza virus
Orthomyxoviridae

The Orthomyxoviridae are a family of RNA viruses that includes five genus: Influenzavirus A, Influenzavirus B, Influenzavirus C, Thogotovirus and Isavirus....
.

Genetic structure and related subtypes

Neuraminidase Ribbon Diagram
H5N1 is a subtype of the species Influenza A virus of the Influenzavirus A
Influenzavirus A

Influenzavirus A is a genus of the Orthomyxoviridae family of viruses. Influenzavirus A includes only one species: Influenza A virus which causes influenza in birds and some mammals....
 genus
Genus

A genus is a low-level taxonomic rank used in the classification of living and fossil organisms. The taxonomic ranks are domain , kingdom , phylum, class , order , family , genus, and species....
 of the Orthomyxoviridae
Orthomyxoviridae

The Orthomyxoviridae are a family of RNA viruses that includes five genus: Influenzavirus A, Influenzavirus B, Influenzavirus C, Thogotovirus and Isavirus....
 family. Like all other influenza A subtypes, the H5N1 subtype is an RNA virus
RNA virus

An RNA virus is a virus that has RNA as its genetic material. This nucleic acid is usually single-stranded RNA but may be double-stranded RNA ....
. It has a segmented genome
Genome

In classical genetics, the genome of a diploid organism including eukarya refers to a full set of chromosomes or genes in a gamete; thereby, a regular somatic cell contains two full sets of genomes....
 of eight negative sense, single-strands of RNA
RNA

Ribonucleic acid is a type of molecule that consists of a long chain of nucleotide units. Each nucleotide consists of a nucleobase, a ribose sugar, and a phosphate....
, abbreviated as PB2, PB1, PA, HA, NP, NA, MP and NS.

HA codes for hemagglutinin
Hemagglutinin

Influenza hemagglutinin or haemagglutinin is a type of hemagglutinin found on the surface of the influenza viruses. It is an antigenic glycoprotein....
, an antigen
Antigen

An antigen is a substance that prompts the generation of antibodies and can cause an immune response. The word originated from the notion that they can stimulate antibody generation....
ic glycoprotein
Glycoprotein

Not to be confused with peptidoglycan or proteoglycan.Glycoproteins are proteins that contain oligosaccharide chains covalently attached to their Peptide side-chains....
 found on the surface of the influenza viruses and is responsible for binding the virus to the cell that is being infected. NA codes for neuraminidase
Neuraminidase

Neuraminidase enzymes are glycoside hydrolase enzymes which cleave the glycosidic linkages of neuraminic acid. Neuraminidase enzymes are a large family, found in a range of organisms....
, an antigenic glycosylated enzyme
Enzyme

Enzymes are biomolecules that catalysis chemical reactions. Almost all enzymes are proteins. In enzymatic reactions, the molecules at the beginning of the process are called Substrate , and the enzyme converts them into different molecules, the products....
 found on the surface of the influenza viruses. It facilitates the release of progeny viruses from infected cells. The hemagglutinin (HA) and neuraminidase (NA) RNA strands specify the structure of proteins that are most medically relevant as targets for antiviral drugs and antibodies
Antibody

Antibodies are gamma globulin proteins that are found in blood or other bodily fluids of vertebrates, and are used by the immune system to identify and neutralize foreign objects, such as bacterium and viruses....
. HA and NA are also used as the basis for the naming of the different subtypes of influenza A viruses. This is where the H and N come from in H5N1.

Influenza A viruses are significant for their potential for disease and death in humans and other animals. Influenza A virus subtypes that have been confirmed in humans, in order of the number of known human pandemic deaths that they have caused, include:

  • H1N1
    H1N1

    HemagglutininNeuraminidase is a subtype of the species Influenzavirus A. H1N1 has mutated into various strains including the Spanish Flu strain , mild human flu strains, endemic pig strains, and various strains found in birds....
    , which caused "Spanish flu
    Spanish flu

    The 1918 flu pandemic was an influenza pandemic that spread to nearly every part of the world. It was caused by an unusually severe and deadly Influenza A virus Strain of subtype H1N1....
    " and currently causes seasonal human flu
    Human flu

    Human flu is a term used to refer to influenza cases caused by Orthomyxoviridae that are endemic to human populations . It is an arbritary categorization scheme, and is not associated with phylogenetics-based taxonomy....
  • H2N2
    H2N2

    H2N2 is a subtype of the species Influenzavirus A . H2N2 has mutated into various strains including the Asian Flu strain , H3N2, and various strains found in birds....
    , which caused "Asian flu"
  • H3N2
    H3N2

    H3N2 is a subtype of the Influenzavirus A. Its name derives from the forms of the two kinds of proteins on the surface of its coat, hemagglutinin and neuraminidase ....
    , which caused "Hong Kong flu" and currently causes seasonal human flu
  • H5N1, the world's major current pandemic
    Pandemic

    A pandemic is an epidemic of infectious disease that spreads through populations across a large region; for instance a continent, or even worldwide....
     threat
  • H7N7
    H7N7

    H7N7 is a subtype of Influenzavirus A, a genus of Orthomyxovirus, the viruses responsible for influenza. Highly pathogenic strains and low pathogenic strains exist....
    , which has unusual zoonotic
    Zoonosis

    A zoonosis or zoonose is any infectious disease that is able to be transmitted from other animals, both wild and domestic, to humans or from humans to animals ....
     potential and killed one person
  • H1N2
    H1N2

    HemagglutininNeuraminidase is a subtype of the species Influenzavirus A . It is currently endemic in both human and pig populations.H1N1, H1N2, and H3N2 are the only known Influenza A virus subtypes currently circulating among humans....
    , which is currently endemic in humans and pigs and causes seasonal human flu
  • H9N2
    H9N2

    H9N2 is a subtype of the species Influenzavirus A . In 1999 and 2003, an H9N2 influenza strain caused illness in three people, aged one, four and five years old, in Hong Kong....
    , which has infected three people
  • H7N2
    H7N2

    H7N2 is a subtype of the species Influenzavirus A .One person in Virginia, US in 2002 and one person in New York, US, in 2003 were found to have serologic evidence of infection from H7N2; both fully recovered....
    , which has infected two people
  • H7N3
    H7N3

    H7N3 is a subtype of the species Influenzavirus A .In North America, the presence of H7N3 was confirmed at several poultry farms in British Columbia in February 2004....
    , which has infected two people
  • H10N7
    H10N7

    H10N7 is a subtype of the species Influenzavirus A . In 2004 in Egypt H10N7 was reported for the first time in humans. It caused illness in two one-year old infants, residents of Ismaillia, Egypt; one child?s father a poultry merchant....
    , which has infected two people


Low pathogenic H5N1

Low pathogenic avian influenza H5N1 (LPAI H5N1) also called "North American" H5N1 commonly occurs in wild birds. In most cases, it causes minor sickness or no noticeable signs of disease in birds. It is not known to affect humans at all. The only concern about it is that it is possible for it to be transmitted to poultry and in poultry mutate into a highly pathogenic strain.

  • 1975 – LPAI H5N1 was detected in a wild mallard duck and a wild blue goose in Wisconsin.


  • 1981 and 1985 – LPAI H5N1 was detected in ducks by the University of Minnesota conducting a sampling procedure in which sentinel ducks were monitored in cages placed in the wild for a short period of time.


  • 1983 – LPAI H5N1 was detected in ring-billed gulls in Pennsylvania.


  • 1986 - LPAI H5N1 was detected in a wild mallard duck in Ohio.


  • 2005 - LPAI H5N1 was detected in ducks in Manitoba, Canada.


  • 2008 - LPAI H5N1 was detected in ducks in New Zealand.


  • 2009 - LPAI H5N1 was detected in commercial poultry in British Columbia.


"In the past, there was no requirement for reporting or tracking LPAI H5 or H7 detections in wild birds so states and universities tested wild bird samples independently of USDA. Because of this, the above list of previous detections might not be all inclusive of past LPAI H5N1 detections. However, the World Organization for Animal Health (OIE) recently changed its requirement of reporting detections of avian influenza. Effective in 2006, all confirmed LPAI H5 and H7 AI subtypes must be reported to the OIE because of their potential to mutate into highly pathogenic strains. Therefore, USDA now tracks these detections in wild birds, backyard flocks, commercial flocks and live bird markets."

Properties of H5N1


Infectivity

Highly pathogenic H5N1
Global Spread of H5n1 Map
 ?  Countries with poultry or wild birds killed by H5N1.
 ?  Countries with humans, poultry and wild birds killed by H5N1.


H5N1 is easily transmissible between birds facilitating a potential global spread of H5N1
Global spread of H5N1

The global spread of highly pathogenic H5N1 in birds is considered a significant Influenza pandemic threat.While other H5N1 strains are known, they are significantly different from a current, highly pathogenic H5N1 strain on a genetic level, making the global spread of this new strain unprecedented....
. While H5N1 undergoes mutation and reassortment, creating variations which can infect species not previously known to carry the virus, not all of these variant forms can infect humans. H5N1 as an avian virus preferentially binds to a type of galactose
Galactose

Galactose is a type of Carbohydrate which is less sweetness than glucose. It is considered a nutritive sweetener because it has food energy.Galactan is a polymer of the sugar galactose....
 receptors that populate the avian respiratory tract from the nose to the lungs and are virtually absent in humans, occurring only in and around the alveoli, structures deep in the lungs where oxygen is passed to the blood. Therefore, the virus is not easily expelled by coughing and sneezing, the usual route of transmission.

H5N1 is mainly spread by domestic poultry
Poultry

Poultry is the category of domesticated birds which some people keep for the purpose of collecting their egg , or kill for their meat and/or feathers....
, both through the movements of infected birds and poultry products and through the use of infected poultry manure as fertilizer or feed. Humans with H5N1 have typically caught it from chickens, which were in turn infected by other poultry or waterfowl. Migrating waterfowl
Waterfowl

Waterfowl are certain wildfowl of the order Anseriformes, especially members of the family Anatidae, which includes ducks, goose, and swans.They are strong swimmers with medium to large bodies....
 (wild duck
Duck

Duck is the common name for a number of species in the Anatidae family of birds. The ducks are divided between several subfamilies listed in full in the Anatidae article; they do not represent a clade but a form taxon, being the Anatidae not considered swans and goose....
s, geese and swan
Swan

Swans are birds of the family Anatidae, which also includes goose and ducks. Swans are grouped with the closely related geese in the subfamily Anserinae where they form the tribe Cygnini....
s) carry H5N1, often without becoming sick. Many species of birds and mammals can be infected with HPAI A(H5N1), but the role of animals other than poultry and waterfowl as disease-spreading hosts is unknown.

According to a report by the World Health Organization
World Health Organization

The World Health Organization is a specialized agency of the United Nations that acts as a coordinating authority on international public health....
, H5N1 may be spread indirectly. The report stated that the virus may sometimes stick to surfaces or get kicked up in fertilizer dust to infect people.

Virulence

H5N1 has mutated
Mutation

In biology, mutations are changes to the nucleotide sequence of the genetic material of an organism. Mutations can be caused by copying errors in the genetic material during cell division, by exposure to ultraviolet or ionizing radiation, chemical mutagens, or virus , or can be induced by the organism, itself, by cellular processes such as s...
 into a variety of strains
Strain (biology)

In biology, strain is a low-level taxonomic rank used in three related ways....
 with differing pathogenic profiles, some pathogenic to one species but not others, some pathogenic to multiple species. Each specific known genetic variation is traceable to a virus isolate of a specific case of infection. Through antigenic drift
Antigenic drift

Antigenic drift is the process of random accumulation of mutations in viral genes recognized by the immune system. Such accumulation may significantly change the antigens of the virus, and may help it evade the immune system....
, H5N1 has mutated into dozens of highly pathogenic varieties divided into genetic clades which are known from specific isolates, but all currently belonging to genotype Z of avian influenza virus H5N1, now the dominant genotype. Figure 1 shows a diagramatic representation of the genetic relatedness of Asian H5N1 hemagglutinin
Hemagglutinin

Influenza hemagglutinin or haemagglutinin is a type of hemagglutinin found on the surface of the influenza viruses. It is an antigenic glycoprotein....
 genes from various isolates of the virus
H5N1 isolates found in Hong Kong
Hong Kong

Hong Kong , officially the Hong Kong Special Administrative Region, is a territory located in Southern China in East Asia, bordering the province of Guangdong to the north and facing the South China Sea to the east, west and south....
 in 1997 and 2001 were not consistently transmitted efficiently among birds and did not cause significant disease in these animals. In 2002 new isolates of H5N1 were appearing within the bird population of Hong Kong. These new isolates caused acute disease, including severe neurological dysfunction and death in duck
Duck

Duck is the common name for a number of species in the Anatidae family of birds. The ducks are divided between several subfamilies listed in full in the Anatidae article; they do not represent a clade but a form taxon, being the Anatidae not considered swans and goose....
s. This was the first reported case of lethal influenza virus infection in wild aquatic birds since 1961. Genotype Z emerged in 2002 through reassortment
Reassortment

Reassortment is the mixing of the genetics of two similar viruses that are infecting the same cell. In particular, reassortment occurs among influenza viruses, whose genomes consist of 8 distinct segments of RNA....
 from earlier highly pathogenic genotypes of H5N1 that first infected birds in China
China

China is a Culture of China, an ancient civilization, and, depending on perspective, a national or multinational entity extending over a large area in East Asia....
 in 1996, and first infected humans in Hong Kong
Hong Kong

Hong Kong , officially the Hong Kong Special Administrative Region, is a territory located in Southern China in East Asia, bordering the province of Guangdong to the north and facing the South China Sea to the east, west and south....
 in 1997. Genotype Z is endemic in birds in Southeast Asia, has created at least two clades that can infect humans, and is spreading across the globe in bird populations. Mutations are occurring within this genotype that are increasing their pathogenicity. Birds are also able to shed the virus for longer periods of time before their death, increasing the transmissibility of the virus.

Transmission and host range

Influenza A   Late Passage
Infected birds transmit H5N1 through their saliva
Saliva

Saliva is the watery and usually frothy substance produced in the mouths of humans and most other animals. Saliva is produced in and secreted from the salivary glands....
, nasal secretions
Mucus

In vertebrates, mucus is a slippery secretion produced by, and covering, mucous membranes. It is a viscous colloid containing antiseptic enzymes and immunoglobulins that serves to protect Epithelium in the respiratory,...
, feces
Feces

Feces, faeces, or f?ces is a waste product from an animal's gastrointestinal tract expelled through the anus during defecation....
 and blood
Blood

Blood is a specialized bodily fluid that delivers necessary substances to the body's Cell s ? such as nutrients and oxygen ? and transports waste products away from those same cells....
. Other animals may become infected with the virus through direct contact with these bodily fluids or through contact with surfaces contaminated with them. H5N1 remains infectious after over 30 days at 0 °C ( 32.0 °F) (over one month at freezing temperature) or 6 days at 37 °C ( 98.6 °F) (one week at human body temperature) so at ordinary temperatures it lasts in the environment for weeks. In Arctic temperatures, it doesn't degrade at all.

Because migratory birds are among the carriers of the highly pathogenic H5N1 virus, it is spreading to all parts of the world. H5N1 is different from all previously known highly pathogenic avian flu viruses in its ability to be spread by animals other than poultry.

In October 2004, researchers discovered that H5N1 is far more dangerous than was previously believed. Waterfowl
Waterfowl

Waterfowl are certain wildfowl of the order Anseriformes, especially members of the family Anatidae, which includes ducks, goose, and swans.They are strong swimmers with medium to large bodies....
 were revealed to be directly spreading the highly pathogenic strain of H5N1 to chicken
Chicken

The chicken is a Domestication fowl. Recent evidence suggests that domestication of the chicken was under way in Vietnam over 10,000 years ago....
s, crow
Crow

The true crows are large passerine birds that form the genus Corvus in the family Corvidae. Ranging in size from the relatively small dove-sized jackdaws to the Common Raven of the Holarctic region and Thick-billed Raven of the highlands of Ethiopia, the 40 or so members of this genus occur on all temperate continents and several offsh...
s, pigeons, and other birds, and the virus was increasing its ability to infect mammals as well. From this point on, avian flu experts increasingly referred to containment as a strategy that can delay, but not ultimately prevent, a future avian flu pandemic.

"Since 1997, studies of influenza A (H5N1) indicate that these viruses continue to evolve, with changes in antigenicity and internal gene constellations; an expanded host range in avian species and the ability to infect felids; enhanced pathogenicity in experimentally infected mice and ferrets, in which they cause systemic infections; and increased environmental stability."

The New York Times, in an article on transmission of H5N1 through smuggled birds, reports Wade Hagemeijer of Wetlands International stating, "We believe it is spread by both bird migration and trade, but that trade, particularly illegal trade, is more important".

The H5N1 bird flu virus can also pass through a pregnant woman's placenta to infect the fetus, researchers reported on Thursday 27 September 2007. They also found evidence of what doctors had long suspected -- that the virus not only affects the lungs, but also passes throughout the body into the gastrointestinal tract, the brain, liver, and blood cells.

High mutation rate

Influenza viruses have a relatively high mutation rate that is characteristic of RNA virus
RNA virus

An RNA virus is a virus that has RNA as its genetic material. This nucleic acid is usually single-stranded RNA but may be double-stranded RNA ....
es. The segmentation of its genome
Genome

In classical genetics, the genome of a diploid organism including eukarya refers to a full set of chromosomes or genes in a gamete; thereby, a regular somatic cell contains two full sets of genomes....
 facilitates genetic recombination
Genetic recombination

Genetic recombination is the process by which a strand of genetic material is broken and then joined to a different DNA molecule. In eukaryotes recombination commonly occurs during meiosis as chromosomal crossover between paired chromosomes....
 by segment reassortment
Reassortment

Reassortment is the mixing of the genetics of two similar viruses that are infecting the same cell. In particular, reassortment occurs among influenza viruses, whose genomes consist of 8 distinct segments of RNA....
 in hosts infected with two different influenza viruses at the same time. A previously uncontagious strain may then be able to pass between humans, one of several possible paths to a pandemic.

The ability of various influenza strains to show species-selectivity is largely due to variation in the hemagglutinin
Hemagglutinin

Influenza hemagglutinin or haemagglutinin is a type of hemagglutinin found on the surface of the influenza viruses. It is an antigenic glycoprotein....
 genes. Genetic mutation
Mutation

In biology, mutations are changes to the nucleotide sequence of the genetic material of an organism. Mutations can be caused by copying errors in the genetic material during cell division, by exposure to ultraviolet or ionizing radiation, chemical mutagens, or virus , or can be induced by the organism, itself, by cellular processes such as s...
s in the hemagglutinin gene that cause single amino acid
Amino acid

In chemistry, an amino acid is a molecule containing both amine and carboxyl functional groups. These molecules are particularly important in biochemistry, where this term refers to alpha-amino acids with the general formula H2NCHRCOOH, where R is an organic substituent....
 substitutions can significantly alter the ability of viral hemagglutinin proteins to bind to receptors
Receptor (biochemistry)

In biochemistry, a receptor is a protein molecule, embedded in either the plasma membrane or cytoplasm of a cell, to which a mobile signaling molecule may attach....
 on the surface of host cells. Such mutations in avian H5N1 viruses can change virus strains from being inefficient at infecting human cells to being as efficient in causing human infections as more common human influenza virus types. This doesn't mean that one amino acid substitution can cause a pandemic, but it does mean that one amino acid substitution can cause an avian flu virus that is not pathogenic in humans to become pathogenic in humans.

H3N2
H3N2

H3N2 is a subtype of the Influenzavirus A. Its name derives from the forms of the two kinds of proteins on the surface of its coat, hemagglutinin and neuraminidase ....
 ("swine flu
Swine flu

Swine influenza refers to influenza cases that are caused by Orthomyxoviridae endemic to populations of pigs. The viruses are referred to as Swine influenza viruses ....
") is endemic in pigs in China, and has been detected in pigs in Vietnam, increasing fears of the emergence of new variant strains. The dominant strain of annual flu virus in January 2006 was H3N2
H3N2

H3N2 is a subtype of the Influenzavirus A. Its name derives from the forms of the two kinds of proteins on the surface of its coat, hemagglutinin and neuraminidase ....
, which is now resistant to the standard antiviral drugs amantadine
Amantadine

Amantadine is the organic compound known formally as 1-aminoadamantane. The molecule consists of adamantane backbone that is substituted at one of the four methyne positions with an amino group....
 and rimantadine
Rimantadine

Rimantadine is an orally administered antiviral drug used to treat, and in rare cases prevent, Influenzavirus A infection. When taken within one to two days of developing symptoms, rimantadine can shorten the duration and moderate the severity of influenza....
. The possibility of H5N1 and H3N2 exchanging genes through reassortment is a major concern. If a reassortment in H5N1 occurs, it might remain an H5N1 subtype, or it could shift subtypes, as H2N2
H2N2

H2N2 is a subtype of the species Influenzavirus A . H2N2 has mutated into various strains including the Asian Flu strain , H3N2, and various strains found in birds....
 did when it evolved into the Hong Kong Flu strain of H3N2
H3N2

H3N2 is a subtype of the Influenzavirus A. Its name derives from the forms of the two kinds of proteins on the surface of its coat, hemagglutinin and neuraminidase ....
.

Both the H2N2
H2N2

H2N2 is a subtype of the species Influenzavirus A . H2N2 has mutated into various strains including the Asian Flu strain , H3N2, and various strains found in birds....
 and H3N2
H3N2

H3N2 is a subtype of the Influenzavirus A. Its name derives from the forms of the two kinds of proteins on the surface of its coat, hemagglutinin and neuraminidase ....
 pandemic strains contained avian influenza virus RNA segments. "While the pandemic human influenza viruses of 1957 (H2N2) and 1968 (H3N2) clearly arose through reassortment between human and avian viruses, the influenza virus causing the 'Spanish flu' in 1918 appears to be entirely derived from an avian source". This e-book is under constant revision and is an excellent guide to Avian Influenza

Humans and H5N1

The earliest infections of humans by H5N1 coincided with an epizootic
Epizootic

In epizoology, an epizootic is a disease that appears as new cases in a given animal population, during a given period, at a rate that substantially exceeds what is "expected" based on recent experience ....
 (an epidemic in nonhumans) of H5N1 influenza in Hong Kong's poultry population. This panzootic
Panzootic

A panzootic is an epizootic that spreads across a large region , or even worldwide. The equivalent in human populations is called a pandemic....
 (a disease affecting animals of many species, especially over a wide area) outbreak was stopped by the killing of the entire domestic poultry population within the territory.

Symptoms in humans


Avian influenza hemagglutinin
Hemagglutinin

Influenza hemagglutinin or haemagglutinin is a type of hemagglutinin found on the surface of the influenza viruses. It is an antigenic glycoprotein....
 bind alpha 2-3 sialic acid
Sialic acid

Sialic acid is a generic term for the N- or O-substituted derivatives of neuraminic acid, a monosaccharide with a nine-carbon backbone....
 receptors while human influenza hemagglutinin
Hemagglutinin

Influenza hemagglutinin or haemagglutinin is a type of hemagglutinin found on the surface of the influenza viruses. It is an antigenic glycoprotein....
 bind alpha 2-6 sialic acid receptors. Usually other differences also exist. There is as yet no human form of H5N1, so all humans who have caught it so far have caught avian H5N1.

In general, humans who catch a humanized Influenza A virus
Influenzavirus A

Influenzavirus A is a genus of the Orthomyxoviridae family of viruses. Influenzavirus A includes only one species: Influenza A virus which causes influenza in birds and some mammals....
 (a human flu
Human flu

Human flu is a term used to refer to influenza cases caused by Orthomyxoviridae that are endemic to human populations . It is an arbritary categorization scheme, and is not associated with phylogenetics-based taxonomy....
 virus of type A) usually have symptoms that include fever
Fever

Fever is a frequent medical sign that describes an increase in internal body temperature to levels above normal. Fever is most accurately characterized as a temporary elevation in the body's thermoregulatory set-point, usually by about 1?2 ?C ....
, cough
Cough

A cough , in medicine, is a sudden and often repetitively occurring defense reflex which helps to clear the large breathing passages from excess secretions, irritants, foreign particles and microbes....
, sore throat
Sore Throat

Sore Throat were a United Kingdom crust punk / grindcore band, formed in Yorkshire in 1987. They are known for being one of the earliest exponents of the grindcore subgenre known as "noisecore", as well launching the careers of several prominent members of the British heavy metal music community....
, muscle aches
Myalgia

Myalgia means "muscle pain" and is a symptom of many diseases and disorders. The most common causes are overuse or over-stretching of a muscle or group of muscles....
, conjunctivitis
Conjunctivitis

Conjunctivitis is an inflammation of the conjunctiva , most commonly due to an allergic reaction or an infection ....
, and, in severe cases, breathing problems and pneumonia
Pneumonia

Pneumonia is an Inflammation illness of the lung. Frequently, it is described as lung parenchyma/alveolus inflammation and abnormal alveolar filling with fluid ....
 that may be fatal. The severity of the infection depends to a large part on the state of the infected person's immune system
Immune system

An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
 and whether the victim has been exposed to the strain before (in which case they would be partially immune). No one knows if these or other symptoms will be the symptoms of a humanized H5N1 flu.

The reported mortality rate
Transmission and infection of H5N1

Transmission and infection of H5N1 from infected avian sources to humans is a concern due to the global spread of H5N1 that constitutes a pandemic threat....
 of highly pathogenic H5N1 avian influenza in a human is high; WHO
World Health Organization

The World Health Organization is a specialized agency of the United Nations that acts as a coordinating authority on international public health....
 data indicates that 60% of cases classified as H5N1 resulted in death. However, there is some evidence that the actual mortality rate of avian flu could be much lower, as there may be many people with a milder symptoms who do not seek treatment and are not counted.

In one case, a boy with H5N1 experienced diarrhea
Diarrhea

In medicine, diarrhea, also spelled diarrhoea , is characterized by frequent loose or liquid bowel movements. The spelling of "diarrhea" is an appropriation of the Greek "diarrhoia" meaning "a flowing through." ....
 followed rapidly by a coma
Coma

In medicine, a coma is a profound state of unconsciousness. A comatose person cannot be awakened, fails to respond normally to pain or light, does not have sleep-wake cycles, and does not take voluntary actions....
 without developing respiratory or flu-like symptoms. There have been studies of the levels of cytokine
Cytokine

Cytokines are a category of signaling molecules that, like hormones and neurotransmitters, are used extensively in cell communication. They are proteins, peptides or glycoproteins....
s in humans infected by the H5N1 flu virus. Of particular concern is elevated levels of tumor necrosis factor-alpha, a protein that is associated with tissue destruction at sites of infection and increased production of other cytokines. Flu virus-induced increases in the level of cytokines is also associated with flu symptoms including fever, chills, vomiting and headache. Tissue damage associated with pathogenic flu virus infection can ultimately result in death. The inflammatory
Inflammation

Inflammation is the complex biological response of Blood vessel tissues to harmful stimuli, such as pathogens, damaged cells, or irritants. It is a protective attempt by the organism to remove the injurious stimuli as well as initiate the healing process for the tissue....
 cascade triggered by H5N1 has been called a 'cytokine storm
Cytokine storm

A cytokine storm is a potentially fatal immune reaction consisting of a positive feedback loop between cytokines and immune cells, with highly elevated levels of various cytokines....
' by some, because of what seems to be a positive feedback
Positive feedback

Positive feedback, sometimes referred to as "cumulative causation", is a feedback loop system in which the system responds to Perturbation of biological system in the same direction as the perturbation....
 process of damage to the body resulting from immune system
Immune system

An immune system is a collection of biological processes within an organism that protects against disease by identifying and killing pathogens and tumour cells....
 stimulation. H5N1 induces higher levels of cytokines than the more common flu virus types.

Treatment and prevention for humans


There is no highly effective treatment for H5N1 flu, but oseltamivir
Oseltamivir

Oseltamivir is an antiviral drug that is used in the treatment and prophylaxis of both Influenzavirus A and Influenzavirus B. Like zanamivir, oseltamivir is a neuraminidase inhibitor....
 (commercially marketed by Roche
Hoffmann-La Roche

F. Hoffmann?La Roche, Ltd. is a Switzerland global health-care company that operates world-wide under two divisions: Pharmaceutical companys and Roche Diagnostics....
 as Tamiflu), can sometimes inhibit the influenza virus from spreading inside the user's body. This drug has become a focus for some governments and organizations trying to prepare for a possible H5N1 pandemic. On April 20, 2006, Roche AG announced that a stockpile
Stockpile

A stockpile is a pile or storage location for bulk materials, forming part of the bulk materials handling process.Stockpiles are used in many different areas, such as in a port, refinery or manufacturing facility....
 of three million treatment courses of Tamiflu is waiting at the disposal of the World Health Organization
World Health Organization

The World Health Organization is a specialized agency of the United Nations that acts as a coordinating authority on international public health....
 to be used in case of a flu pandemic; separately Roche donated two million courses to the WHO for use in developing nations that may be affected by such a pandemic but lack the ability to purchase large quantities of the drug.

However, WHO expert Hassan al-Bushra has said:
"Even now, we remain unsure about Tamiflu's real effectiveness. As for a vaccine
Vaccine

A vaccine is a biological preparation that establishes or improves immunity to a particular disease.Vaccines can be prophylaxis , or Medication ....
, work cannot start on it until the emergence of a new virus, and we predict it would take six to nine months to develop it. For the moment, we cannot by any means count on a potential vaccine to prevent the spread of a contagious influenza virus, whose various precedents in the past 90 years have been highly pathogenic".


There are several H5N1 vaccine
Vaccine

A vaccine is a biological preparation that establishes or improves immunity to a particular disease.Vaccines can be prophylaxis , or Medication ....
s for several of the avian H5N1 varieties, but the continual mutation of H5N1 renders them of limited use to date: while vaccines can sometimes provide cross-protection against related flu strains, the best protection would be from a vaccine specifically produced for any future pandemic flu virus strain. Dr. Daniel Lucey, co-director of the Biohazardous Threats and Emerging Diseases graduate program at Georgetown University
Georgetown University

Georgetown University is a Society of Jesus private university located in Georgetown, Washington, D.C. Father John Carroll founded the school in 1789, though its roots extend back to 1634....
 has made this point, "There is no H5N1 pandemic
Pandemic

A pandemic is an epidemic of infectious disease that spreads through populations across a large region; for instance a continent, or even worldwide....
 so there can be no pandemic vaccine
Vaccine

A vaccine is a biological preparation that establishes or improves immunity to a particular disease.Vaccines can be prophylaxis , or Medication ....
". However, "pre-pandemic vaccines" have been created; are being refined and tested; and do have some promise both in furthering research and preparedness for the next pandemic. Vaccine manufacturing companies are being encouraged to increase capacity so that if a pandemic vaccine is needed, facilities will be available for rapid production of large amounts of a vaccine specific to a new pandemic strain.

Animal and lab studies suggest that Relenza (zanamivir
Zanamivir

Zanamivir is a neuraminidase inhibitor used in the treatment of and prophylaxis of both Influenzavirus A and Influenzavirus B. Zanamivir was the first neuraminidase inhibitor commercially developed....
), which is in the same class of drugs as Tamiflu, may also be effective against H5N1. In a study performed on mice in 2000, "zanamivir was shown to be efficacious in treating avian influenza viruses H9N2, H6N1, and H5N1 transmissible to mammals". While no one knows if zanamivir will be useful or not on a yet to exist pandemic strain of H5N1, it might be useful to stockpile zanamivir as well as oseltamivir in the event of an H5N1 influenza pandemic. Neither oseltamivir nor zanamivir can currently be manufactured in quantities that would be meaningful once efficient human transmission starts.

In September, 2006, a WHO scientist announced that studies had confirmed cases of H5N1 strains resistant to Tamiflu and Amantadine. Tamiflu-resistant strains have also appeared in the EU, which remain sensitive to Relenza.

Preparations for pandemic


"The United States
United States

The United States of America is a Federal government constitutional republic comprising U.S. state and a federal district. The country is situated mostly in central North America, where its Contiguous United States and Washington, D.C., the Capital districts and territories, lie between the Pacific Ocean and Atlantic Oceans, Borders of the U...
 is collaborating closely with eight international organizations, including the World Health Organization
Who

*Who is an English language interrogative pronoun....
 (WHO), the Food and Agriculture Organization of the United Nations (FAO), the World Organization for Animal Health (OIE), and 88 foreign governments to address the situation through planning, greater monitoring, and full transparency in reporting and investigating avian influenza occurrences. The United States and these international partners have led global efforts to encourage countries to heighten surveillance for outbreaks in poultry and significant numbers of deaths in migratory birds and to rapidly introduce containment measures. The U.S. Agency for International Development (USAID) and the U.S. Department of State, the U.S. Department of Health and Human Services (HHS), and Agriculture (USDA) are coordinating future international response measures on behalf of the White House with departments and agencies across the federal government".

Together steps are being taken to "minimize the risk of further spread in animal populations", "reduce the risk of human infections", and "further support pandemic planning and preparedness".

Ongoing detailed mutually coordinated onsite surveillance and analysis of human and animal H5N1 avian flu outbreaks are being conducted and reported by the USGS National Wildlife Health Center, the Centers for Disease Control and Prevention
Centers for Disease Control and Prevention

The Centers for Disease Control and Prevention is an agency of the United States United States Department of Health and Human Services based in Atlanta, Georgia, United States adjacent to the campus of Emory University and northeast of downtown Atlanta....
, the World Health Organization
World Health Organization

The World Health Organization is a specialized agency of the United Nations that acts as a coordinating authority on international public health....
, the European Commission
European Commission

The European Commission is the executive of the European Union. The body is responsible for proposing legislation, implementing decisions, upholding the Treaties of the European Union and the general day-to-day running of the Union....
, and others.

Effect on human society

H5N1 has had a huge effect on human
Human

A human being, also human or man, is a member of a species of bipedalism primates in the family Hominidae . Mitochondrial DNA evidence indicates that modern humans originated in east Africa about 200,000 years ago....
 society
Society

A society is a group of humans characterized by patterns of relationships between individuals that share a distinctive culture and/or institutions....
, especially the financial
FINANCIAL

FINANCIAL is the weekly English language-language newspaper with offices in Tbilisi, Georgia and Kiev, Ukraine. Published by Intelligence Group LLC, FINANCIAL is focused on opinion leaders and top business decision-makers; It's about world?s largest companies, investing, careers, and small business....
, political, social
Social

Social refers to a characteristic of living organisms . It always refers to the interaction of organisms with other organisms and to their collective co-existence, irrespective of whether they are aware of it or not, and irrespective of whether the interaction is voluntary or involuntary....
, and personal
Personal

Personal means "of or pertaining to a person, or belonging to a person in some way", for example:* Hygiene#Personal hygiene* Personal identity...
 responses to both actual and predicted death
Death

Death is the permanent termination of the biological functions that define a life organism. It refers to both a particular event and to the condition that results thereby....
s in bird
Bird

Birds are wing, Bipedalismal, endothermic , vertebrate animals that lay egg . There are around 10,000 living species, making them the most numerous tetrapod vertebrates....
s, human
Human

A human being, also human or man, is a member of a species of bipedalism primates in the family Hominidae . Mitochondrial DNA evidence indicates that modern humans originated in east Africa about 200,000 years ago....
s, and other animal
Animal

Animals are a major group of multicellular, eukaryotic organisms of the Kingdom Animalia or Metazoa. Their body plan eventually becomes fixed as they develop, although some undergo a process of metamorphosis later on in their life....
s.

Billions of U.S. dollars are being raised and spent to research H5N1 and prepare for a potential avian influenza pandemic
Pandemic

A pandemic is an epidemic of infectious disease that spreads through populations across a large region; for instance a continent, or even worldwide....
. Over ten billion dollars have been spent and over two hundred million birds killed to try to contain H5N1.

People have reacted by buying less chicken causing poultry sales and prices to fall. Many individuals have stockpiled supplies for a possible flu pandemic. One of the best known experts on H5N1, Dr. Robert Webster
Robert Webster

For the New South Wales parliamentarian see Robert James Webster'For the two-time Olympic gold medalist in diving, see Bob WebsterRobert G....
, told ABC News he had a three month supply of food and water in his house as he prepared for what he considered a reasonably likely occurrence of a major pandemic.

International health officials and other experts have pointed out that many unknown questions still hover around the disease

Dr. David Nabarro
David Nabarro

Dr. David Nabarro , works as the Senior UN System Coordinator for Avian and Human Influenza at United Nations Headquarters in New York. He has been seconded to this position from the World Health Organization....
, Chief Avian Flu Coordinator for the United Nations, and former Chief of Crisis Response for the World Health Organization has described himself as "quite scared" about the potential of H5N1's potential impact on humans. Nabarro has been accused of being alarmist before and on his first day in his role for the United Nations he proclaimed the avian flu could kill 150 million people. In an interview with the International Herald Tribune
International Herald Tribune

The International Herald Tribune is a widely read English language international newspaper. It combines the resources of its own correspondents with those of The New York Times and is printed at 33 sites throughout the world, for sale in more than 180 countries....
, Nabarro compares avian flu to AIDS
AIDS

Acquired immune deficiency syndrome or acquired immunodeficiency syndrome is a disease of the human immune system caused by the HIV ....
 in Africa, warning that underestimations led to inappropriate focus for research and intervention.

See also

  • Antigenic shift
    Antigenic shift

    Antigenic shift is the process by which at least two different strains of a virus, , especially influenza, combine to form a new subtype having a mixture of the surface antigens of the two original strains....
  • Influenza research
  • Fujian flu
    Fujian flu

    Fujian flu refers to flu caused by either a Fujian human flu strain of the H3N2 subtype of the Influenzavirus A or a Fujian bird flu strain of the H5N1 subtype of the Influenza A virus....
  • Global spread of H5N1
    Global spread of H5N1

    The global spread of highly pathogenic H5N1 in birds is considered a significant Influenza pandemic threat.While other H5N1 strains are known, they are significantly different from a current, highly pathogenic H5N1 strain on a genetic level, making the global spread of this new strain unprecedented....
  • H5N1 clinical trials
    H5N1 clinical trials

    H5N1 clinical trials are clinical trials concerning H5N1 vaccines. They are intended to discover pharmacological effects and identify any adverse reactions the vaccines may achieve in humans....
  • ICEID
    ICEID

    The ICEID or International Conference on Emerging Infectious Diseases is a conference for public health professionals on the subject of emerging infectious diseases....
  • National Influenza Centers
    National Influenza Centers

    National Influenza Centers are institutions which are formally recognized as such by the World Health Organization ."The WHO Global Influenza Surveillance Network was established in 1952....
  • Reporting disease cases
    Reporting disease cases

    Disease surveillance is an epidemiology practice by which the spread of disease is monitored in order to establish patterns of progression. The main role of disease surveillance is to predict, observe, and minimize the harm caused by outbreak, epidemic, and pandemic situations, as well as increase our knowledge as to what factors might contri...
  • Zoonosis
    Zoonosis

    A zoonosis or zoonose is any infectious disease that is able to be transmitted from other animals, both wild and domestic, to humans or from humans to animals ....


Sources and notes


External links

Official - international
  • UN United Nations
    United Nations

    The United Nations is an international organization whose stated aims are to facilitate cooperation in international law, international security, economic development, Social change, human rights and achieving world peace....
    • WHO World Health Organization
      World Health Organization

      The World Health Organization is a specialized agency of the United Nations that acts as a coordinating authority on international public health....
      • Guide to WHO's H5N1 pages
      • - tracks human cases and deaths
      • Centers, names, locations, and phone numbers
    • Information resources, animations, videos, photos
      • Food and Agriculture Organisation - Bi-weekly Avian Influenza Maps - tracks animal cases and deaths
      • Projects, Information resources
  • OIE World Organisation for Animal Health - tracks animal cases and deaths


Official - United States
United States

The United States of America is a Federal government constitutional republic comprising U.S. state and a federal district. The country is situated mostly in central North America, where its Contiguous United States and Washington, D.C., the Capital districts and territories, lie between the Pacific Ocean and Atlantic Oceans, Borders of the U...
  • U.S. Government's avian flu information site
  • U.S. Agency for International Development - Avian Influenza Response
  • Centers for Disease Control - responsible agency for avian influenza in humans in US - Facts About Avian Influenza (Bird Flu) and Avian Influenza A (H5N1) Virus
  • National Wildlife Health Center - responsible agency for avian influenza in animals in US
  • A part of the National Biological Information Infrastructure and partner of the NWHC, this agency collects and distributes news and information about wildlife diseases such as avian influenza and coordinates collaborative information sharing efforts.
  • U.S. Department of Health & Human Services - Pandemic Influenza Plan


Official - European Union
European Union

The European Union is an economic and political union of 27 European Union member state, located primarily in Europe. It was established by the Treaty of Maastricht on 1 November 1993 upon the foundations of the pre-existing European Economic Community....
Official - United Kingdom
United Kingdom

The United Kingdom of Great Britain and Northern Ireland, commonly known as the United Kingdom , the UK or Britain,is a sovereign state located off the northwestern coast of continental Europe....
  • — DEFRA generic contingency plan for controlling and eradicating an outbreak of an exotic animal disease. PDF hosted by BBC (a government entity).
  • NHS
    National Health Service

    The National Health Service is the name commonly used to refer to the four publicly funded healthcare systems of the United Kingdom, collectively or individually, although only the health service in England uses the name 'National Health Service' without further qualification....
     (a government entity). Contingency planning for an influenza pandemic. PDF hosted by BBC


Technical External links dealing with technical aspects can be found here
H5N1 genetic structure

H5N1 genetic structure is the molecular structure of the H5N1 virus's RNA.H5N1 is an Influenza A virus subtype. Experts believe it might mutate into a form that transmits easily from person to person....
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News and General information External links dealing with news and general information can be found here
Global spread of H5N1

The global spread of highly pathogenic H5N1 in birds is considered a significant Influenza pandemic threat.While other H5N1 strains are known, they are significantly different from a current, highly pathogenic H5N1 strain on a genetic level, making the global spread of this new strain unprecedented....
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Databases
  • Database of influenza genomic sequences and related information.