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Crenarchaeota

 

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Crenarchaeota



 
 
In taxonomy
Alpha taxonomy

Alpha taxonomy is the science of finding, describing and categorising organisms, thus leading to the recognition of proposed taxonomic groups, or taxon , which may then be naming conventions....
, the Crenarchaeota (Greek for "spring old quality") (also known as Crenarchaea or eocytes) are a phylum of the Archaea
Archaea

The Archaea are a group of single-celled microorganisms. A single individual or species from this domain is called an archaeon . Archaea, like bacteria, are prokaryotic....
. Initially, the Crenarchaeota were thought to be extremophile
Extremophile

An extremophile is an organism that thrives in and may even require physically or geochemically extreme environment that are detrimental to the majority of life on Earth....
s (e.g., thermophilic and psychrophilic organisms) but recent studies have identified them as the most abundant archaea in the marine environment. Originally, they were separated from the other archaea based on rRNA sequences; since then physiological features, such as lack of histone
Histone

In biology, histones are the chief protein components of chromatin. They act as spools around which DNA winds, and they play a role in gene regulation....
s have supported this division.






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In taxonomy
Alpha taxonomy

Alpha taxonomy is the science of finding, describing and categorising organisms, thus leading to the recognition of proposed taxonomic groups, or taxon , which may then be naming conventions....
, the Crenarchaeota (Greek for "spring old quality") (also known as Crenarchaea or eocytes) are a phylum of the Archaea
Archaea

The Archaea are a group of single-celled microorganisms. A single individual or species from this domain is called an archaeon . Archaea, like bacteria, are prokaryotic....
. Initially, the Crenarchaeota were thought to be extremophile
Extremophile

An extremophile is an organism that thrives in and may even require physically or geochemically extreme environment that are detrimental to the majority of life on Earth....
s (e.g., thermophilic and psychrophilic organisms) but recent studies have identified them as the most abundant archaea in the marine environment. Originally, they were separated from the other archaea based on rRNA sequences; since then physiological features, such as lack of histone
Histone

In biology, histones are the chief protein components of chromatin. They act as spools around which DNA winds, and they play a role in gene regulation....
s have supported this division. However, some crenarchaea were found to have histones. Until recently all cultured Crenarchaea had been thermophilic or hyperthermophilic organisms, some of which have the ability to grow at up to 113 °C. These organisms stain gram negative and are morphologically diverse having rod, cocci, filamentous
Filamentation

Filamentation is the anomalous growth of certain bacteria, such as E. coli, in which cells continue to elongate but do not divide . Bacterial filamentation is a defect in completing replication and is observed in bacteria responding to a various stresses....
 and oddly shaped cells.

Sulfolobus

One of the best characterized members of the Crenarcheota is Sulfolobus solfataricus. This organism was originally isolated from geothermally-heated
Hot Springs

Hot Springs may refer to:* Hot Springs, Arkansas* Hot Springs, Montana* Hot Springs, North Carolina* Hot Springs, South Dakota* Hot Springs, Virginia...
 sulfuric springs in Italy, and grows at 80 °C and pH of 2-4. Since its initial characterization by Wolfram Zillig, a pioneer in thermophile and archaeon research, similar species in the same genus
Genus

A genus is a low-level taxonomic rank used in the classification of living and fossil organisms. The taxonomic ranks are domain , kingdom , phylum, class , order , family , genus, and species....
 have been found around the world. Unlike the vast majority of cultured thermophiles, Sulfolobus
Sulfolobus

In alpha taxonomy, Sulfolobus is a genus of the Sulfolobaceae.Sulfolobus species grow in Hot springs with optimal growth occurring at pH 2-3 and temperatures of 75-80 ?C, making them acidophiles and thermophiles respectively....
 grows aerobically
Aerobic organism

An aerobic organism or aerobe is an organism that can survive and grow in an oxygenated environment....
 and chemoorganotroph
Chemoorganotroph

Chemoorganotrophs are organism which utilize organic compounds as their energy source. These organic chemicals include glucose and acetate. All animal are chemoorganotrophs, as are fungus and some bacteria....
ically (gaining its energy from organic sources such as sugars). These factors allow a much easier growth than anaerobic organism
Anaerobic organism

An anaerobic organism is any organism that does not require oxygen for growth and may even die in its presence....
s and have led to Sulfolobus becoming a model organism for the study of hyperthermophiles and a large group of diverse viruses that replicate within them.

Marine species

Beginning in 1992, data were published that reported sequences of genes belonging to the Crenarchaea in marine environments., Since then analysis of the abundance lipid
Lipid

Lipids are broadly defined as any fat-soluble , naturally-occurring molecule, such as fats, oils, waxes, cholesterol, sterols, fat-soluble vitamins , monoglycerides, diglycerides, phospholipids, and others....
s from the membranes of Crenarchaea taken from the open ocean have been used to determine the concentration of these “low temperature Crenarchaea” (See TEX-86
TEX-86

TEX86 is a paleothermometer based on the composition of membrane lipids of the marine plankton Crenarchaeota.Wuchter et al. found that the number of cyclopentane rings in Crenarchaeota membrane lipids changes linearly with temperature in order to regulate membrane fluidity....
). Based on these measurements these organisms are thought to be very abundant and one of the main contributors to the fixation of carbon
Carbon fixation

Carbon fixation is a process found in autotrophs , usually driven by photosynthesis, whereby carbon dioxide is changed into organic materials. Carbon fixation can also be carried out by the process of calcification in marine, calcifying organisms such as Emiliania huxleyi....
. DNA sequences from Crenarchaea have also been found in soil and freshwater environments suggesting that this phylum is ubiquitous to most environments.

In 2005, evidence of the first cultured “low temperature Crenarchaea” was published. Named Nitrosopumilus maritimus, it is an ammonia-oxidizing organism isolated from a marine aquarium tank and grown at 28 °C.

Eocyte hypothesis


Further reading


Scientific journals





Scientific books


Scientific databases


External links


  • from the University of Wisconsin Virtual Microbiology site.
  • (at DOE's
    United States Department of Energy

    The United States Department of Energy is a United States Cabinet-level department of the United States government of the United States responsible for Energy policy of the United States and nuclear safety....
     IMG system
    Integrated Microbial Genomes System

    The Integrated Microbial Genomes is a genome browsing and annotation system developed by the DOE-Joint Genome Institute. IMG contains all the draft and complete microbial genomes sequenced by the DOE-JGI integrated with other publicly available genomes ....
    )