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Coenzyme
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Many enzymes require a cofactor for catalytic activity, accelerating the transformation of a specific substrate to a particular product. The inactive protein, without the cofactor is called an apoenzyme, while the complete enzyme with cofactor is the holoenzyme. The cofactor can be either a coenzyme or a metal ion (usually Mg2+, Cu+, Mn2+ for instance). A coenzyme is a small organic molecule (typically a molecular mass less than 1000 Da) that directly participates in the enzyme reaction.

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Many enzymes require a cofactor for catalytic activity, accelerating the transformation of a specific substrate to a particular product. The inactive protein, without the cofactor is called an apoenzyme, while the complete enzyme with cofactor is the holoenzyme. The cofactor can be either a coenzyme or a metal ion (usually Mg2+, Cu+, Mn2+ for instance). A coenzyme is a small organic molecule (typically a molecular mass less than 1000 Da) that directly participates in the enzyme reaction. In the latter case, when it is difficult to remove without denaturing the enzyme, it can be called a prosthetic group. It is important to emphasize that there is no sharp division between loosely and tightly bound coenzymes. Indeed, a typical coenzyme like NAD+ can be tightly bound in some enzyme, while it is loosely bound in others. Thiamine diphosphate (ThDP) is tightly bound in transketolase or pyruvate decarboxylase, while it is less tightly bound in pyruvate dehydrogenase. Other coenzymes, flavin adenine dinucleotide (FAD), biotin or lipoamide for instance, are covalently bound. Tightly bound coenzymes are generally regenerated during the same reaction cycle, while loosely bound coenzymes can be regenerated in a subsequent reaction catalyzed by a different enzyme. In the latter case, the coenzyme can also be considered a substrate or cosubstrate.
Some enzymes or enzyme complexes require several cofactors. A good example is the multienzyme complex pyruvate dehydrogenase. This enzyme complex at the junction of glycolysis and the citric acid cycle requires five coenzymes and one metal ion : loosely bound thiamine diphosphate (ThDP), covalently bound lipoamide and flavin adenine dinucleotide (FAD), and the cosubstrates nicotinamide adenine dinucleotide (NAD+) and coenzyme A (CoA) and a metal ion (Mg2+).
In the metabolism, coenzymes play the role of carriers, in both group-transfer reactions (organaic radicals or phosphates), for example coenzyme A and adenosine triphosphate (ATP), and redox reactions, such as coenzyme Q10, flavin adenine dinucleotide (FAD) and nicotinamide adenine dinucleotide (NAD+). Coenzymes are consumed and recycled continuously in metabolism, with one set of enzymes adding a chemical group to the coenzyme and another set removing it. For example, enzymes such as ATP synthase continuously phosphorylate adenosine diphosphate (ADP), converting it into ATP, while enzymes such as kinases dephosphorylate the ATP and convert it back to ADP.
Coenzymes molecules are often vitamins or are made from vitamins. Many coenzymes contain the nucleotide adenosine monophosphate (AMP) as part of their structures, such as ATP, coenzyme A, FAD and NAD+. This common structure may reflect a common evolutionary origin as part of ribozymes in an ancient RNA world. It has been suggested that the AMP part of the molecule can be considered a kind a "handle" by which the enzyme can "grasp" the coenzyme to switch it between different catalytic centers.
Definition
The terms cofactor, coenzyme and prosthetic group represent three different, though sometimes overlapping concepts. The terms cofactor (the more general term) and coenzyme (organic molecule) refer to enzymes and as such to the functional properties of a protein. On the other hand "prosthetic group", emphasizes the nature of the binding (tight or covalent) and thus refers to a structural property. For instance, you would not call the sugar moiety of a glycoprotein, a cofactor, as it has no enzymatic activity. On the other hand, the covalently bound coenzyme FAD is a prosthetic group, while the generally loosely bound coenzyme NAD+ is a coenzyme but not a prosthetic group. Different sources give slightly different definitions of coenzymes, cofactors and prosthetic groups. Some consider tightly-bound organic molecules as prosthetic groups and not as coenzymes, while others define all non-protein organic molecules needed for enzyme activity as coenzymes, and classify those that are tightly bound as coenzyme prosthetic groups. Unsurprisingly, these terms are often used loosely.
A 1979 letter in Trends in Biochemical Sciences noted the confusion in the literature and the essentially arbitrary distinction made between prosthetic groups and coenzymes and proposed the following scheme. Here, cofactors were defined as an additional substance apart from protein and substrate that is required for enzyme activity and a prosthetic group as a substance that undergoes its whole catalytic cycle attached to a single enzyme molecule. However, the author could not arrive at a single all-encompassing definition of a "coenzyme" and proposed that this term be dropped from use in the literature.
Coenzymes as metabolic intermediates
Metabolism involves a vast array of chemical reactions, but most fall under a few basic types of reactions that involve the transfer of functional groups. This common chemistry allows cells to use a small set of metabolic intermediates to carry chemical groups between different reactions. These group-transfer intermediates are the coenzymes.
Each class of group-transfer reaction is carried out by a particular coenzyme, which is the substrate for a set of enzymes that produce it, and a set of enzymes that consume it. An example of this are the dehydrogenases that use nicotinamide adenine dinucleotide (NAD+) as a cofactor. Here, hundreds of separate types of enzymes remove electrons from their substrates and reduce NAD+ to NADH. This reduced coenzyme is then a substrate for any of the reductases in the cell that need to reduce their substrates.
Coenzymes are therefore continuously recycled as part of metabolism. As an example, the total quantity of ATP in the human body is about 0.1 mole. This ATP is constantly being broken down into ADP, and then converted back into ATP. Thus, at any given time, the total amount of ATP + ADP remains fairly constant. The energy used by human cells requires the hydrolysis of 100 to 150 moles of ATP daily which is around 50 to 75 kg. Typically, a human will use up their body weight of ATP over the course of the day. This means that each ATP molecule is recycled 1000 to 1500 times daily.
Types
Acting as coenzymes in organisms is the major role of vitamins, although vitamins do have other functions in the body. Many coenzymes also contain a nucleotide: such as the electron carriers NAD and FAD, or coenzyme A, the coenzyme that carries acyl groups. Most coenzymes are found in a huge variety of species, and some are universal to all forms of life. An exception to this wide distribution is a group of unique coenzymes that evolved in methanogens, which are restricted to this group of archaea.
Vitamins and derivatives
| Coenzyme | Vitamin | Additional component | Chemical group(s) transferred | Distribution | | Thiamine diphosphate | Thiamine (B1) | None | 2-carbon groups, a cleavage | Bacteria, archaea and eukaryotes
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| NAD+ and NADP+ | Niacin (B3) | ADP | Electrons | Bacteria, archaea and eukaryotes
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| Pyridoxal phosphate | Pyridoxine (B6) | None | amino groups | Bacteria, archaea and eukaryotes
|- | Lipoamide | Lipoic acid | None | electrons, acyl groups | Bacteria, archaea and eukaryotes
|- | Cobalamine | Cobalamine (B12) | None | hydrogen, alkyl groups | Bacteria, archaea and eukaryotes
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| Biotin | Biotin (H) | None | CO2 | Bacteria, archaea and eukaryotes
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| Coenzyme A | Pantothenic acid (B5) | ADP | Acetyl group and other acyl groups | Bacteria, archaea and eukaryotes
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| Tetrahydrofolic acid | Folic acid (B9) | Glutamate residues | Methyl, formyl, methylene and formimino groups | Bacteria, archaea and eukaryotes
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|Menaquinone | Vitamin K | None | Carbonyl group and electrons | Bacteria, archaea and eukaryotes
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|Ascorbic acid | Vitamin C | None | Electrons | Bacteria, archaea and eukaryotes
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|FAD | Riboflavin (B2) | None | Electrons | Bacteria, archaea and eukaryotes
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|Coenzyme F420 | Riboflavin (B2) | Amino acids | Electrons | Methanogens and some bacteria
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Non-vitamins
Evolution
Coenzymes, such as ATP and NADH, are present in all known forms of life and form a core part of metabolism. Such universal conservation indicates that these molecules evolved very early in the development of living things. At least some of the current set of coenzymes may therefore have been present in the last universal ancestor, which lived about 4 billion years ago.
Coenzymes may have been present even earlier in the history of life on Earth. Interestingly, the nucleotide adenosine is present in coenzymes that catalyse many basic metabolic reactions such as methyl, acyl, and phosphoryl group transfer, as well as redox reactions. This ubiquitous chemical scaffold has therefore been proposed to be a remnant of the RNA world, with early ribozymes evolving to bind a restricted set of nucleotides and related compounds. Adenosine-based coenzymes are thought to have acted as interchangeable adaptors that allowed enzymes and ribozymes to bind new coenzymes through small modifications in existing adenosine-binding domains, which had originally evolved to bind a different cofactor. This process of adapting a pre-evolved structure for a novel use is referred to as exaptation.
History
The first coenzyme to be discovered was NAD+, which was identified by Arthur Harden and William Youndin 1906. They noticed that adding boiled and filtered yeast extract greatly accelerated alcoholic fermentation in unboiled yeast extracts. They called the unidentified factor responsible for this effect a coferment. Through a long and difficult purification from yeast extracts, this heat-stable factor was identified as a nucleotide sugar phosphate by Hans von Euler-Chelpin. Other coenzymes were identified throughout the early 20th century, with ATP being isolated in 1929 by Karl Lohmann, and coenzyme A being discovered in 1945 by Fritz Albert Lipmann.
The functions of coenzymes were at first mysterious, but in 1936, Otto Heinrich Warburg identified the function of NAD+ in hydride transfer. This discovery was followed in the early 1940s by the work of Herman Kalckar, who established the link between the oxidation of sugars and the generation of ATP. This confirmed the central role of ATP in energy transfer that had been proposed by Fritz Albert Lipmann in 1941. Later, in 1949, Morris Friedkin and Albert L. Lehninger proved that the coenzyme NAD+ linked metabolic pathways such as the citric acid cycle and the synthesis of ATP.
See also
Further reading
External links
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