Acute disseminated encephalomyelitis (ADEM) >| Accepted | -
| Addison's disease | Accepted | -
| Alopecia areata | Accepted | -
| Ankylosing spondylitis | Doubtful | -
| Antiphospholipid antibody syndrome (APS) | Accepted | -
| Autoimmune hemolytic anemia | Accepted | -
| Autoimmune hepatitis | Accepted | | Anti-Smooth Muscle Actin
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| Autoimmune inner ear disease | Suspected | -
| Bullous pemphigoid | Accepted | II | Anti-Bullous Pemphigoid Antigen 1 and 2 (Hemidesmosome antigens)
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| Coeliac disease | Accepted | IV?? | Anti-transglutaminase
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| Chagas disease | Suspected | -
| Chronic obstructive pulmonary disease | Suspected | -
| Crohns Disease (one of two types of idiopathic inflammatory bowel disease "IBD") | Accepted | IV | -
| Dermatomyositis | Accepted | -
| Diabetes mellitus type 1 | Accepted | -
| Endometriosis | Suspected | -
| Goodpasture's syndrome | Accepted | II | Anti-Basment Membrane Collagen Type IV Protein
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| Graves' disease | Accepted | -
| Guillain-Barré syndrome (GBS) | Accepted | IV | Anti-ganglioside
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| Hashimoto's disease | Accepted | IV | -
| Hidradenitis suppurativa | Suspected | -
| Kawasaki disease | Suspected | -
| IgA nephropathy | Suspected | -
| Idiopathic thrombocytopenic purpura | Accepted | -
| Interstitial cystitis | Suspected | -
| Lupus erythematosus | Accepted | -
| Mixed Connective Tissue Disease | Accepted | -
| Morphea | Suspected | -
| Multiple sclerosis (MS) | Accepted | IV | Anti-Myelin Basic Protein
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| Myasthenia gravis | Accepted | -
| Narcolepsy | Suspected | -
| Neuromyotonia | Suspected | -
| Pemphigus Vulgaris | Accepted | II | Anti-Desmogein 3
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| Pernicious anaemia | Accepted | II | -
| Polymyositis | Accepted | -
| Primary biliary cirrhosis | Accepted | | Anti-p62, Anti-sp100, Anti-Mitochondrial(M2)
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| Psoriasis] | Rheumatoid arthritis | Accepted | III | Rheumatoid factor
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| Schizophrenia | Suspected | - Sarcoidosis
| Scleroderma | Suspected | | Anti-topoisomerase
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| Sjögren's syndrome | Accepted | |